iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.00e-08	34.9	147	189

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlp....CgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl d+k   ++l+    C+H+fh++C+  w       + + +CP+Cr
   Q: 147  CAICLGDYKG-KHLLRqlpdCNHLFHLKCIDTW------LRLNPTCPVCR 189
           ********55.444444559*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MLQFTLSYIK SLTKNLSIIS PLPPPKPIKQ NHQTKPAMNN FQPPPPSEMP DYNGLLGTDD 60
IGGFRYGIGV SIGVLLLITT ITLTSYYCTR NQLSSSPSQT NQDSTRIHHH HHHVIIDVVP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTATCCAAT TCAATTGTGC AACTAAGTGT TTTATGTTTG AAATAAACAA CGAATTAATG 60
GGTCAATATA TTTATATATG CGTTATACTA TTACAGTATT ACCAATACAA TATTAGAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G35910

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006033	Arabidopsis lyrata	97.78	9.00e-78	281.00
IUUC-Bol-016119	Brassica oleracea	82.22	2.00e-62	230.00
IUUC-Bra-018069	Brassica rapa	85.56	1.00e-60	224.00
IUUC-Gma-044295	Glycine max	61.90	6.00e-31	125.00
IUUC-Mtr-058770	Medicago truncatula	69.57	2.00e-28	117.00
IUUC-Mac-064629	Musa acuminata	53.01	5.00e-25	106.00
IUUC-Oba-075041	Oryza barthii	56.52	2.00e-19	87.00
IUUC-Obr-076328	Oryza brachyantha	54.29	4.00e-18	84.00
IUUC-Pop-099253	Populus trichocarpa	60.94	6.00e-32	129.00
IUUC-Ppe-101919	Prunus persica	61.72	9.00e-31	125.00
IUUC-Sly-111057	Solanum lycopersicum	57.97	2.00e-30	124.00
IUUC-Stu-112816	Solanum tuberosum	62.35	6.00e-40	155.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence