iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099776

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000355

Gene Name

POPTRDRAFT_738775; POPTR_0019s10760g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0019s10760	POPTR_0019s10760.1	POPTR_0019s10760.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	26.57	1.00e-11	65.90	IUUC-Cel-018593

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDGPPVNDFC SICHGHFNIA CQANCSHWFC GDCIMLVWHH GSVLQPCKCP LCRRQITLLV 60
PGEASLRERS DPDVAEVLGK IERYNHLFGG NTSGLIQRMQ DLPFLLRRLL REIMDPQRSL 120

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Nucleotide Sequence
(Fasta)

ATAAATAAAT AGAACGGGAA TTTATAGACA GAGGCCGTTG TTGGATTATT ATTATTATTT 60
ATTTAAAAAC GTAGAAATCT TCTTCGTCAA CATTTTTAGT TTCCCAAATC GAAAGACGTT 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR010652--DUF1232
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF06803--DUF1232

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0019s10760g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000837	Aegilops tauschii	45.71	4.00e-33	133.00
IUUC-Atr-003163	Amborella trichopoda	62.09	8.00e-61	225.00
IUUC-Aly-006202	Arabidopsis lyrata	75.14	2.00e-60	224.00
IUUC-Ath-007325	Arabidopsis thaliana	75.68	2.00e-72	264.00
IUUC-Bdi-014259	Brachypodium distachyon	60.22	3.00e-58	217.00
IUUC-Bol-016302	Brassica oleracea	74.59	3.00e-71	260.00
IUUC-Bra-017738	Brassica rapa	74.59	3.00e-71	260.00
IUUC-Cel-018593	Caenorhabditis elegans	28.00	1.00e-12	66.20
IUUC-Cin-025256	Ciona intestinalis	36.21	2.00e-17	82.00
IUUC-Eeu-035324	Erinaceus europaeus	35.19	6.30e-01	27.70
IUUC-Gma-043890	Glycine max	69.02	1.00e-59	221.00
IUUC-Hvu-047464	Hordeum vulgare	60.11	6.00e-57	212.00
IUUC-Lch-049846	Latimeria chalumnae	35.63	6.00e-16	76.30
IUUC-Mtr-057996	Medicago truncatula	61.08	5.00e-47	179.00
IUUC-Mac-065250	Musa acuminata	66.49	2.00e-63	234.00
IUUC-Opr-070637	Ochotona princeps	35.29	2.00e-11	62.80
IUUC-Obr-076075	Oryza brachyantha	59.65	8.00e-51	192.00
IUUC-Oin-079850	Oryza indica	60.77	2.00e-53	201.00
IUUC-Ome-081191	Oryza meridionalis	61.88	1.00e-53	201.00
IUUC-Oni-082886	Oryza nivara	61.33	1.00e-53	201.00
IUUC-Osa-085833	Oryza sativa	61.33	2.00e-53	201.00
IUUC-Ppa-095627	Physcomitrella patens	54.59	3.00e-47	181.00
IUUC-Ppe-101586	Prunus persica	58.09	5.00e-36	142.00
IUUC-Smo-109218	Selaginella moellendorffii	50.54	1.00e-40	158.00
IUUC-Stu-112127	Solanum tuberosum	70.27	8.00e-66	242.00
IUUC-Sbi-113997	Sorghum bicolor	60.99	7.00e-54	202.00
IUUC-Tca-121028	Theobroma cacao	80.00	9.00e-69	251.00
IUUC-Tae-124956	Triticum aestivum	60.22	4.00e-58	216.00
IUUC-Tur-126558	Triticum urartu	58.44	1.00e-44	171.00
IUUC-Vvi-131393	Vitis vinifera	71.04	1.00e-61	228.00
IUUC-Xtr-132512	Xenopus tropicalis	35.26	1.00e-19	89.40

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence