iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sha-107334

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AEFK01022214

Gene Name

PRPF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSHAG00000017658.1	ENSSHAT00000020987.1	ENSSHAP00000020820.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-38	127.4	406	444
UBD/Beta-Prp	3.20e-93	312.3	231	478

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH  ++++++f ++  ++++Gs+D+t+kvWDlr+ +++ 
   Q: 406  GHLKEIYGINFsPNgYHIATGSGDNTCKVWDLRQRRCVY 444
           7999********77799*****************99985 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk........ilvtgseDrtikvwdlstgkcvht 89
           ++ +i+  +fsp+++llat++++g  k+w+v + +ll++l gh+  v a+ f+p++          l++++ D+ +k+w+l++ ++v  
   Q: 231  DDRPISYCHFSPNSKLLATACWSGLCKLWSVPDCSLLHTLRGHNTNVGAIVFHPKSTvsldkkdvNLASCAADGSVKLWSLESDEPVAD 319
           68899999*********************************************9988888889999*********************** PP
   S: 90   lkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg 178
           ++gh+ +v  + ++psg +l ++  dr  r+wdle ++++   ++gh+  v  +++h+dg+l  +G+lD + r+Wdl+tg+++  l+g 
   Q: 320  IEGHSVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL-HQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEG- 406
           *****************************************.********************************************99. PP
   S: 179  htdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs.pnderlvsgssDgsiriW 249
           h + +y ++f++ng ++++gs d+t k+wdl++ +cv+t  +h++ v+ v+f   ++++l++g+ D++ +iW
   Q: 407  HLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEpIHGNFLLTGAYDNTAKIW 478
           *****************************************************88***************** PP

Organism

Sarcophilus harrisii

Protein Sequence
(Fasta)

MASSRASATA TKTPSRTPED TASPVVKKPH IYYGSLEEKE KERLARGESG MLGKEGIKAG 60
IEAGNINITS GEVFEIEEHI SERQAEVLAE FERRKRARQI NVSTDDSEVK ACLRALGEPI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTCTT CTCGCGCTTC GGCCACGGTG AGGCTCCGGC TTTGGTATTT GGGGTTGGCT 60
GGGAGCTCTC TGCCCCCATG TTTGGGAGTC AGAATTGACT TCTGTCGCTT CCCTACAACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0015030--C:Cajal body
GO:0016607--C:nuclear speck
GO:0071001--C:U4/U6 snRNP

KEGG

shr:100927218

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	44.16	3.00e-100	358.00
IUUC-Aml-001737	Ailuropoda melanoleuca	96.44	0.00e+00	989.00
IUUC-Atr-002828	Amborella trichopoda	43.98	6.00e-105	374.00
IUUC-Apl-003723	Anas platyrhynchos	88.51	0.00e+00	946.00
IUUC-Aca-004972	Anolis carolinensis	89.14	0.00e+00	894.00
IUUC-Aly-006531	Arabidopsis lyrata	42.47	6.00e-93	334.00
IUUC-Ath-007367	Arabidopsis thaliana	43.36	1.00e-106	380.00
IUUC-Ago-007893	Ashbya gossypii	33.11	3.00e-56	212.00
IUUC-Acl-008236	Aspergillus clavatus	38.45	6.00e-91	328.00
IUUC-Afl-008522	Aspergillus flavus	40.21	2.00e-99	356.00
IUUC-Afu-008904	Aspergillus fumigatus	38.92	9.00e-96	343.00
IUUC-Ani-009198	Aspergillus nidulans	39.58	1.00e-98	353.00
IUUC-Ang-009662	Aspergillus niger	42.29	1.00e-99	356.00
IUUC-Aor-009881	Aspergillus oryzae	40.21	2.00e-99	356.00
IUUC-Ate-010333	Aspergillus terreus	38.51	1.00e-87	317.00
IUUC-Ame-011697	Astyanax mexicanus	80.20	0.00e+00	815.00
IUUC-Bgr-012254	Blumeria graminis	38.97	2.00e-98	353.00
IUUC-Bta-012615	Bos taurus	94.84	0.00e+00	967.00
IUUC-Bci-013720	Botrytis cinerea	38.84	1.00e-99	356.00
IUUC-Bdi-014302	Brachypodium distachyon	44.98	1.00e-108	386.00
IUUC-Bol-015594	Brassica oleracea	42.46	2.00e-96	346.00
IUUC-Bra-017465	Brassica rapa	42.24	7.00e-97	347.00
IUUC-Cel-018632	Caenorhabditis elegans	43.63	3.00e-108	385.00
IUUC-Cja-019747	Callithrix jacchus	95.42	0.00e+00	1004.00
IUUC-Cfa-020288	Canis familiaris	96.44	0.00e+00	992.00
IUUC-Cpo-021440	Cavia porcellus	94.28	0.00e+00	972.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	47.47	4.00e-85	307.00
IUUC-Csa-023139	Chlorocebus sabaeus	97.90	0.00e+00	696.00
IUUC-Cho-024481	Choloepus hoffmanni	94.25	0.00e+00	853.00
IUUC-Cin-025106	Ciona intestinalis	59.72	8.00e-178	616.00
IUUC-Csv-026087	Ciona savignyi	57.65	1.00e-176	612.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	37.93	2.00e-93	336.00
IUUC-Cne-026793	Cryptococcus neoformans	40.86	2.00e-105	376.00
IUUC-Dre-028723	Danio rerio	79.41	0.00e+00	788.00
IUUC-Dno-029299	Dasypus novemcinctus	95.85	0.00e+00	987.00
IUUC-Dor-030345	Dipodomys ordii	69.12	4.00e-90	325.00
IUUC-Dse-031562	Dothistroma septosporum	37.16	1.00e-90	327.00
IUUC-Dme-031783	Drosophila melanogaster	56.46	4.00e-138	484.00
IUUC-Ete-032669	Echinops telfairi	93.50	0.00e+00	994.00
IUUC-Eca-033566	Equus caballus	96.44	0.00e+00	986.00
IUUC-Eeu-034524	Erinaceus europaeus	97.49	5.00e-145	507.00
IUUC-Fca-036215	Felis catus	96.44	0.00e+00	991.00
IUUC-Fal-037018	Ficedula albicollis	90.21	0.00e+00	795.00
IUUC-Fox-037936	Fusarium oxysporum	37.21	2.00e-85	309.00
IUUC-Fso-038366	Fusarium solani	37.66	3.00e-91	328.00
IUUC-Gmo-038966	Gadus morhua	66.11	3.00e-139	487.00
IUUC-Ggr-039942	Gaeumannomyces graminis	36.33	4.00e-84	305.00
IUUC-Gga-040797	Gallus gallus	91.02	0.00e+00	936.00
IUUC-Gac-042598	Gasterosteus aculeatus	68.64	0.00e+00	667.00
IUUC-Gma-044220	Glycine max	44.75	8.00e-103	367.00
IUUC-Ggo-044682	Gorilla gorilla	96.05	0.00e+00	979.00
IUUC-Hsa-045804	Homo sapiens	95.23	0.00e+00	1002.00
IUUC-Hvu-047567	Hordeum vulgare	44.19	4.00e-95	341.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	95.03	0.00e+00	1004.00
IUUC-Kpa-049369	Komagataella pastoris	34.05	2.00e-62	232.00
IUUC-Lch-050074	Latimeria chalumnae	80.00	0.00e+00	817.00
IUUC-Lpe-051333	Leersia perrieri	43.79	5.00e-99	354.00
IUUC-Loc-052164	Lepisosteus oculatus	81.60	0.00e+00	835.00
IUUC-Lma-053088	Leptosphaeria maculans	36.57	4.00e-85	308.00
IUUC-Laf-053460	Loxodonta africana	95.03	0.00e+00	1004.00
IUUC-Mcc-055859	Macaca mulatta	96.44	0.00e+00	991.00
IUUC-Meu-056134	Macropus eugenii	99.81	0.00e+00	1031.00
IUUC-Mor-057251	Magnaporthe oryzae	37.02	6.00e-86	311.00
IUUC-Mpo-057375	Magnaporthe poae	40.00	2.00e-53	202.00
IUUC-Mtr-057656	Medicago truncatula	44.19	6.00e-93	334.00
IUUC-Mla-059145	Melampsora laricipopulina	40.66	1.00e-102	366.00
IUUC-Mga-059855	Meleagris gallopavo	87.93	0.00e+00	932.00
IUUC-Mvi-060372	Microbotryum violaceum	42.49	5.00e-95	341.00
IUUC-Mmr-060826	Microcebus murinus	95.65	0.00e+00	986.00
IUUC-Mdo-062119	Monodelphis domestica	99.40	0.00e+00	999.00
IUUC-Mmu-063351	Mus musculus	96.44	0.00e+00	990.00
IUUC-Mac-064846	Musa acuminata	44.47	1.00e-95	343.00
IUUC-Mpu-066006	Mustela putorius furo	96.44	0.00e+00	991.00
IUUC-Mlu-067398	Myotis lucifugus	96.25	0.00e+00	988.00
IUUC-Nfi-068399	Neosartorya fischeri	38.72	3.00e-101	362.00
IUUC-Ncr-068711	Neurospora crassa	37.71	4.00e-93	335.00
IUUC-Nle-069982	Nomascus leucogenys	95.42	0.00e+00	1004.00
IUUC-Opr-070596	Ochotona princeps	95.04	0.00e+00	1002.00
IUUC-Ont-072374	Oreochromis niloticus	74.90	0.00e+00	753.00
IUUC-Oan-073166	Ornithorhynchus anatinus	93.86	0.00e+00	749.00
IUUC-Ocu-074371	Oryctolagus cuniculus	96.64	0.00e+00	992.00
IUUC-Oba-075083	Oryza barthii	43.61	3.00e-102	365.00
IUUC-Obr-076405	Oryza brachyantha	43.56	1.00e-98	352.00
IUUC-Ogl-077683	Oryza glaberrima	43.41	4.00e-102	365.00
IUUC-Ogu-078486	Oryza glumaepatula	43.64	7.00e-102	363.00
IUUC-Oin-079679	Oryza indica	43.61	8.00e-105	374.00
IUUC-Olo-080243	Oryza longistaminata	45.66	3.00e-90	325.00
IUUC-Ome-081230	Oryza meridionalis	43.41	9.00e-105	374.00
IUUC-Oni-082961	Oryza nivara	43.41	8.00e-105	374.00
IUUC-Opu-083189	Oryza punctata	42.54	2.00e-101	362.00
IUUC-Oru-084353	Oryza rufipogon	43.69	1.00e-102	366.00
IUUC-Osa-085458	Oryza sativa	43.41	9.00e-105	374.00
IUUC-Ola-086940	Oryzias latipes	74.46	0.00e+00	757.00
IUUC-Olu-087580	Ostreococcus lucimarinus	35.47	3.00e-64	238.00
IUUC-Oga-088703	Otolemur garnettii	90.63	0.00e+00	952.00
IUUC-Oar-089829	Ovis aries	95.22	0.00e+00	970.00
IUUC-Ptr-090838	Pan troglodytes	95.23	0.00e+00	1002.00
IUUC-Pan-092261	Papio anubis	95.05	0.00e+00	998.00
IUUC-Psi-093020	Pelodiscus sinensis	90.61	0.00e+00	951.00
IUUC-Pno-094858	Phaeosphaeria nodorum	37.07	8.00e-80	290.00
IUUC-Ppa-095531	Physcomitrella patens	45.79	4.00e-119	421.00
IUUC-Pfo-096812	Poecilia formosa	68.69	0.00e+00	665.00
IUUC-Pab-097805	Pongo abelii	85.32	0.00e+00	858.00
IUUC-Pop-100051	Populus trichocarpa	44.16	6.00e-105	374.00
IUUC-Pca-100152	Procavia capensis	95.53	0.00e+00	995.00
IUUC-Ppe-101244	Prunus persica	46.68	3.00e-107	381.00
IUUC-Pva-102529	Pteropus vampyrus	91.60	0.00e+00	954.00
IUUC-Pgr-103550	Puccinia graminis	36.88	6.00e-103	367.00
IUUC-Ptt-103951	Puccinia triticina	34.27	2.00e-80	293.00
IUUC-Pte-104151	Pyrenophora teres	37.37	3.00e-80	292.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	38.01	6.00e-82	298.00
IUUC-Rno-105747	Rattus norvegicus	96.25	0.00e+00	988.00
IUUC-Sce-106418	Saccharomyces cerevisiae	34.29	2.00e-68	252.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	35.25	6.00e-72	264.00
IUUC-Spo-108189	Schizosaccharomyces pombe	38.34	5.00e-82	298.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	37.98	1.00e-97	350.00
IUUC-Smo-109578	Selaginella moellendorffii	46.81	3.00e-112	398.00
IUUC-Sit-110102	Setaria italica	44.34	7.00e-104	370.00
IUUC-Sly-111668	Solanum lycopersicum	46.73	2.00e-107	382.00
IUUC-Stu-111928	Solanum tuberosum	45.09	8.00e-107	380.00
IUUC-Sar-113266	Sorex araneus	83.60	0.00e+00	808.00
IUUC-Sbi-114134	Sorghum bicolor	43.67	2.00e-103	369.00
IUUC-Sre-115114	Sporisorium reilianum	41.43	1.00e-104	373.00
IUUC-Ssc-115443	Sus scrofa	96.44	0.00e+00	989.00
IUUC-Tgu-117157	Taeniopygia guttata	90.26	0.00e+00	887.00
IUUC-Tru-118587	Takifugu rubripes	74.01	0.00e+00	729.00
IUUC-Tsy-119157	Tarsius syrichta	97.18	0.00e+00	768.00
IUUC-Tni-120427	Tetraodon nigroviridis	74.46	0.00e+00	740.00
IUUC-Tca-121368	Theobroma cacao	44.21	5.00e-106	378.00
IUUC-Tre-122074	Trichoderma reesei	37.45	1.00e-88	320.00
IUUC-Tvi-122349	Trichoderma virens	36.94	1.00e-87	316.00
IUUC-Tae-125651	Triticum aestivum	43.86	1.00e-102	366.00
IUUC-Tur-126532	Triticum urartu	43.34	2.00e-88	319.00
IUUC-Tme-126951	Tuber melanosporum	41.05	1.00e-102	367.00
IUUC-Tbe-128136	Tupaia belangeri	86.83	0.00e+00	892.00
IUUC-Ttr-129169	Tursiops truncatus	95.97	5.00e-162	563.00
IUUC-Uma-129399	Ustilago maydis	41.96	1.00e-101	363.00
IUUC-Vda-129842	Verticillium dahliae	37.77	2.00e-94	339.00
IUUC-Vpa-130440	Vicugna pacos	95.23	0.00e+00	1003.00
IUUC-Vvi-131075	Vitis vinifera	47.17	8.00e-108	384.00
IUUC-Xtr-132713	Xenopus tropicalis	48.72	2.00e-108	385.00
IUUC-Xma-133002	Xiphophorus maculatus	78.83	1.00e-171	595.00
IUUC-Yli-134569	Yarrowia lipolytica	34.93	1.00e-77	283.00
IUUC-Zma-135799	Zea mays	42.18	9.00e-101	360.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence