iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-098876

Ensembl Protein ID

POPTR_0001s20770.1

UniProt Accession

B9N190; B9N190_POPTR

Genbank Protein ID

ERP65863.1

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_742882; POPTR_0001s20770g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s20770	POPTR_0001s20770.1	POPTR_0001s20770.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.30e-23	81.9	464	502
UBD/Beta-Prp	2.20e-46	159.5	422	774

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgvll 36
           H ++v++laf  ++  l +++++dD+tikvWD +tg +l
   Q: 464  HVGGVNDLAFstPNkQLcVITCGDDKTIKVWDASTGAKL 502
           999*******98664334799***********9998765 PP

UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkllrsl...sgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsv 97
            ++ v +spd+sl+ +++ ++ +++++++  + +r+      h ++v+++ fs   k    +t+++D+tikvwd stg  ++t++ghe+ v
   Q: 422  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGNDEVRQHleiDAHVGGVNDLAFSTPNKqlCVITCGDDKTIKVWDASTGAKLYTFEGHEAPV 512
           5667889***********************999654323389***********88777899****************************** PP
   S: 98   lslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtltgghtds 182
           +s+  +   + +++ s+  d  i+ w  ++     + +++  ++ ++++++ dg  l+s+++    D+++  W+ + g + rt  g  ++s
   Q: 513  YSICPHYkeNIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRLFSCGTskdgDSFIVEWNESEGAVKRTYLGFRKQS 602
           **865544488***************99997777745555.5599999999999888888765555889999**************9**** PP
   S: 183  vyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvks..vrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn...... 264
              ++fd ++++++++++d ++k+wd+ + + + t  +    + s  +rf +++++l++ + D+ i+i  +++   ll+t+++        
   Q: 603  WGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTTIDADGGLPASprIRFNKDGTLLAVSANDNGIKILaNTDGIRLLRTFENLSfdasrt 693
           ************************************999987775338888*****************77888888888888877888876 PP
   S: 265  ........ssvisvavlsfgdnvl..................................................vlgsedskvniwklkkn 297
                              + +v+                                                  ++ ++++k +iwkl+++
   Q: 694  sesiakvtL----------SASVVaiagmvrwtclfiyssirilcssnlhinypsitqliingdarnlgdvkprLTEESNDKSKIWKLTEI 774
           644444330..........344444444445555666666677777777777777799999999999999999988888899999999876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SMAVEILVKD LKVFSTFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAACTCTGT GGGGGAGAGA GTCTATACAG AGAAAAAAGA TAAAAAAATT TGTGCTTCAT 60
TTCTACAGAG AAAGAAAGAG AAAGAAAGGG TCTGATCTCT CAGTTGCTTT CTTTCGGAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011047--Quinoprotein_ADH-like_supfam
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

KEGG

pop:POPTR_0001s20770g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	77.29	0.00e+00	1767.00
IUUC-Aly-005472	Arabidopsis lyrata	82.51	0.00e+00	1860.00
IUUC-Ath-007640	Arabidopsis thaliana	82.25	0.00e+00	1880.00
IUUC-Bdi-014914	Brachypodium distachyon	76.73	0.00e+00	1735.00
IUUC-Bol-016225	Brassica oleracea	82.43	0.00e+00	1853.00
IUUC-Bra-016893	Brassica rapa	80.94	0.00e+00	1822.00
IUUC-Gma-044036	Glycine max	85.82	0.00e+00	1977.00
IUUC-Hvu-047688	Hordeum vulgare	77.29	0.00e+00	1669.00
IUUC-Lpe-051514	Leersia perrieri	75.83	0.00e+00	1690.00
IUUC-Mtr-058037	Medicago truncatula	84.70	0.00e+00	1893.00
IUUC-Mac-065382	Musa acuminata	78.94	0.00e+00	1815.00
IUUC-Oba-075912	Oryza barthii	78.67	0.00e+00	1776.00
IUUC-Obr-076921	Oryza brachyantha	77.96	0.00e+00	1779.00
IUUC-Ogl-077334	Oryza glaberrima	78.39	0.00e+00	1786.00
IUUC-Ogu-078494	Oryza glumaepatula	78.39	0.00e+00	1786.00
IUUC-Oin-079720	Oryza indica	77.57	0.00e+00	1790.00
IUUC-Olo-081034	Oryza longistaminata	76.04	0.00e+00	1761.00
IUUC-Ome-081778	Oryza meridionalis	78.31	0.00e+00	1788.00
IUUC-Oni-082412	Oryza nivara	78.67	0.00e+00	1776.00
IUUC-Opu-083406	Oryza punctata	76.96	0.00e+00	1726.00
IUUC-Oru-084328	Oryza rufipogon	78.47	0.00e+00	1776.00
IUUC-Osa-085765	Oryza sativa	78.39	0.00e+00	1786.00
IUUC-Ppa-095814	Physcomitrella patens	68.72	0.00e+00	1536.00
IUUC-Ppe-101370	Prunus persica	88.40	0.00e+00	2004.00
IUUC-Smo-109119	Selaginella moellendorffii	68.43	0.00e+00	1483.00
IUUC-Sit-110288	Setaria italica	77.87	0.00e+00	1743.00
IUUC-Sly-111739	Solanum lycopersicum	83.32	0.00e+00	1902.00
IUUC-Sbi-114078	Sorghum bicolor	78.05	0.00e+00	1739.00
IUUC-Tca-121628	Theobroma cacao	86.25	0.00e+00	1952.00
IUUC-Tae-125775	Triticum aestivum	77.46	0.00e+00	1767.00
IUUC-Tur-126412	Triticum urartu	77.12	0.00e+00	1766.00
IUUC-Vvi-131079	Vitis vinifera	86.07	0.00e+00	1974.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence