iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tur-126412

Ensembl Protein ID

TRIUR3_32601-P1

UniProt Accession

M7YS45; M7YS45_TRIUA

Genbank Protein ID

EMS49891.1

Protein Name

Topless-related protein 1

Genbank Nucleotide ID

KD237304

Gene Name

TRIUR3_32601

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIUR3_32601	TRIUR3_32601-T1	TRIUR3_32601-P1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-22	78.6	456	492
UBD/Beta-Prp	1.10e-49	169.9	411	693

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtgv 34
           H ++v+++af  ++  l +++++dD+tikvW+ ++g+
   Q: 456  HVGGVNDIAFahPNkQLcIITCGDDKTIKVWEATSGT 492
           99*********97653359*************98885 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrsl...sgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           ++  ++ + +spd++l+ +++ ++ +++++++ g+ +r+      h ++v+++ f +  k   ++t+++D+tikvw+  +g+   t++ghe+ v
   Q: 411  PTVSVNRIIWSPDGTLFGVAYSRHIVQIYSYHGGDDIRQHleiDAHVGGVNDIAFAHPNKqlCIITCGDDKTIKVWEATSGTKQFTFEGHEAPV 504
           5556777899************************99665323389**********99888899******************************* PP
   S: 98   lslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsG..slDrtvrl..Wdlktgkllrtltgghtdsvys 185
           +s+  +   + +++ s+  d  i+ w  ++     + +++  ++ ++++++ dg+ l+s+  s+D+   l  W+ + g + rt +g  ++s   
   Q: 505  YSVCPHYkeNIQFIFSTALDGKIKAWLYDNLGSRVDYDAP-GHWCTTMAYSADGSRLFSCgtSKDGESHLveWNESEGAVKRTYQGFRKRSMGV 597
           **855544388***************99998777756655.56999999***9*999998334566544333999******************* PP
   S: 186  lsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvks..vrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn...ssvisvavl 273
           ++fd ++++++++++   +k+wd+ +++ + t ++    + s  +rf +++++l++ + D+ i++  + +   ll+tl+++    s++ s +v 
   Q: 598  VQFDTTRNRFLAAGDEFVIKIWDMDNTSLLTTIEADGGLPASprIRFNKEGTLLAVSTVDNGIKVLaNADGVRLLRTLENRSfdaSRSASETVT 691
           ***********************************998877533788899***************76888888888888877776333332222 PP
   S: 274  sf 275
           + 
   Q: 692  KN 693
           33 PP

Organism

Triticum urartu

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKY FEDEVINGNW DEVERYLGGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD LKVFASFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTTCTC TCAGCCGGGA GCTCGTCTTC CTCATCCTGC AGTTCCTCGA TGAGGAGAAG 60
TTCAAGGAGA CCGTCCACAA GTGAGTGATT CAAACCCCCA CCCCAAAAAA GTCAAAAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000565	Aegilops tauschii	96.58	0.00e+00	2225.00
IUUC-Atr-002737	Amborella trichopoda	77.39	0.00e+00	1734.00
IUUC-Aly-005472	Arabidopsis lyrata	78.66	0.00e+00	1726.00
IUUC-Ath-007640	Arabidopsis thaliana	77.83	0.00e+00	1735.00
IUUC-Bdi-014914	Brachypodium distachyon	92.33	0.00e+00	2095.00
IUUC-Bol-015359	Brassica oleracea	77.26	0.00e+00	1726.00
IUUC-Bra-016893	Brassica rapa	77.21	0.00e+00	1724.00
IUUC-Gma-043911	Glycine max	79.35	0.00e+00	1804.00
IUUC-Hvu-047688	Hordeum vulgare	95.33	0.00e+00	2060.00
IUUC-Lpe-051514	Leersia perrieri	88.31	0.00e+00	1964.00
IUUC-Mtr-058037	Medicago truncatula	79.68	0.00e+00	1775.00
IUUC-Mac-065382	Musa acuminata	80.63	0.00e+00	1873.00
IUUC-Oba-075912	Oryza barthii	91.16	0.00e+00	2034.00
IUUC-Obr-076921	Oryza brachyantha	91.18	0.00e+00	2063.00
IUUC-Ogl-077334	Oryza glaberrima	91.28	0.00e+00	2066.00
IUUC-Ogu-078494	Oryza glumaepatula	91.28	0.00e+00	2066.00
IUUC-Oin-079720	Oryza indica	89.85	0.00e+00	2058.00
IUUC-Olo-081034	Oryza longistaminata	91.73	0.00e+00	2055.00
IUUC-Ome-081778	Oryza meridionalis	91.19	0.00e+00	2068.00
IUUC-Oni-082412	Oryza nivara	91.16	0.00e+00	2034.00
IUUC-Opu-083406	Oryza punctata	89.73	0.00e+00	2008.00
IUUC-Oru-084328	Oryza rufipogon	91.15	0.00e+00	2052.00
IUUC-Osa-085765	Oryza sativa	91.28	0.00e+00	2066.00
IUUC-Pop-098876	Populus trichocarpa	77.12	0.00e+00	1768.00
IUUC-Ppe-101370	Prunus persica	80.33	0.00e+00	1847.00
IUUC-Smo-109119	Selaginella moellendorffii	70.02	0.00e+00	1512.00
IUUC-Sit-110288	Setaria italica	89.66	0.00e+00	2027.00
IUUC-Sly-111739	Solanum lycopersicum	78.80	0.00e+00	1777.00
IUUC-Stu-112409	Solanum tuberosum	69.82	0.00e+00	1590.00
IUUC-Sbi-114078	Sorghum bicolor	89.80	0.00e+00	2022.00
IUUC-Tca-121628	Theobroma cacao	77.99	0.00e+00	1788.00
IUUC-Tae-125600	Triticum aestivum	97.09	0.00e+00	2227.00
IUUC-Vvi-131079	Vitis vinifera	78.67	0.00e+00	1793.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence