iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Psi-093300

Ensembl Protein ID

ENSPSIP00000008638.1

UniProt Accession

K7FKS8; K7FKS8_PELSI

Genbank Protein ID

ENSPSIP00000008638

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AGCU01049024

Gene Name

RBBP4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPSIG00000007839.1	ENSPSIT00000008682.1	ENSPSIP00000008638.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-37	125.7	237	271

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           Ht++v+cl+f   s+ +l++Gs D+t+ +WDlr  
   Q: 237  HTAEVNCLSFnpySEFILATGSADKTVALWDLRNL 271
           **********96554568*************9875 PP

Organism

Pelodiscus sinensis

Protein Sequence
(Fasta)

MTHALEWPSL TAQWLPDVTR PEGKDFSIHR LVLGTHTSDE QNHLVIASVQ LPNDDAQFDA 60
SHYDSEKGEF GGFGSVSGKI EIEIKINHEG EVNRARYMPQ NPCIIATKTP SSDVLVFDYT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NTACCCCCCC CCCCCCCCCC 60
CCACTGCAGA GCTGGAGCAC ACAATCTACT AAACTTGTCC CTTTCAAGGC TCTGGTGTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0033186--C:CAF-1 complex
GO:0005829--C:cytosol
GO:0035098--C:ESC/E(Z) complex
GO:0000790--C:nuclear chromatin
GO:0016581--C:NuRD complex
GO:0016589--C:NURF complex
GO:0008094--F:DNA-dependent ATPase activity
GO:0031492--F:nucleosomal DNA binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980--F:RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0043044--P:ATP-dependent chromatin remodeling
GO:0006335--P:DNA replication-dependent nucleosome assembly
GO:0006336--P:DNA replication-independent nucleosome assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000757	Aegilops tauschii	60.88	6.00e-132	463.00
IUUC-Aml-001339	Ailuropoda melanoleuca	99.49	0.00e+00	795.00
IUUC-Atr-003075	Amborella trichopoda	67.28	3.00e-155	541.00
IUUC-Apl-003952	Anas platyrhynchos	100.00	0.00e+00	806.00
IUUC-Aca-004508	Anolis carolinensis	99.74	0.00e+00	805.00
IUUC-Aly-006342	Arabidopsis lyrata	66.75	6.00e-153	533.00
IUUC-Ath-006855	Arabidopsis thaliana	66.75	3.00e-153	534.00
IUUC-Ago-007892	Ashbya gossypii	39.26	9.00e-73	267.00
IUUC-Acl-008163	Aspergillus clavatus	52.23	2.00e-116	412.00
IUUC-Afl-008645	Aspergillus flavus	51.71	3.00e-112	398.00
IUUC-Afu-009091	Aspergillus fumigatus	52.49	1.00e-116	412.00
IUUC-Ani-009478	Aspergillus nidulans	47.77	6.00e-95	340.00
IUUC-Ang-009707	Aspergillus niger	51.71	8.00e-112	396.00
IUUC-Aor-010028	Aspergillus oryzae	51.71	3.00e-112	398.00
IUUC-Ate-010416	Aspergillus terreus	50.51	1.00e-115	409.00
IUUC-Ame-010598	Astyanax mexicanus	96.92	0.00e+00	785.00
IUUC-Bgr-012001	Blumeria graminis	48.95	2.00e-94	338.00
IUUC-Bta-012851	Bos taurus	100.00	0.00e+00	806.00
IUUC-Bci-013815	Botrytis cinerea	49.10	1.00e-112	399.00
IUUC-Bdi-014926	Brachypodium distachyon	66.58	6.00e-151	526.00
IUUC-Bol-015856	Brassica oleracea	66.67	1.00e-152	533.00
IUUC-Bra-016725	Brassica rapa	62.76	4.00e-147	514.00
IUUC-Cel-018587	Caenorhabditis elegans	72.14	3.00e-169	587.00
IUUC-Cja-019884	Callithrix jacchus	100.00	0.00e+00	806.00
IUUC-Cfa-020343	Canis familiaris	100.00	0.00e+00	806.00
IUUC-Cpo-021591	Cavia porcellus	100.00	0.00e+00	806.00
IUUC-Cre-022563	Chlamydomonas reinhardtii	61.48	3.00e-142	497.00
IUUC-Cho-024506	Choloepus hoffmanni	99.49	0.00e+00	798.00
IUUC-Cin-025589	Ciona intestinalis	89.74	0.00e+00	738.00
IUUC-Csv-026216	Ciona savignyi	91.12	0.00e+00	744.00
IUUC-Cgl-026564	Colletotrichum gloeosporioides	47.19	2.00e-106	379.00
IUUC-Cne-026792	Cryptococcus neoformans	54.50	5.00e-123	434.00
IUUC-Cme-027307	Cyanidioschyzon merolae	49.88	1.00e-114	406.00
IUUC-Dre-028742	Danio rerio	97.17	0.00e+00	786.00
IUUC-Dno-029114	Dasypus novemcinctus	100.00	0.00e+00	806.00
IUUC-Dse-031282	Dothistroma septosporum	46.70	4.00e-99	354.00
IUUC-Dme-032126	Drosophila melanogaster	91.58	0.00e+00	740.00
IUUC-Ete-032731	Echinops telfairi	100.00	0.00e+00	806.00
IUUC-Eca-033533	Equus caballus	98.46	0.00e+00	787.00
IUUC-Eeu-034644	Erinaceus europaeus	100.00	3.00e-130	457.00
IUUC-Fca-036202	Felis catus	100.00	0.00e+00	806.00
IUUC-Fal-037084	Ficedula albicollis	100.00	0.00e+00	806.00
IUUC-Fox-037974	Fusarium oxysporum	49.10	1.00e-110	392.00
IUUC-Fso-038246	Fusarium solani	48.32	8.00e-111	393.00
IUUC-Gmo-039214	Gadus morhua	97.16	0.00e+00	777.00
IUUC-Ggr-039741	Gaeumannomyces graminis	48.98	4.00e-107	381.00
IUUC-Gga-040396	Gallus gallus	100.00	0.00e+00	806.00
IUUC-Gac-042477	Gasterosteus aculeatus	95.91	0.00e+00	778.00
IUUC-Gma-042791	Glycine max	67.02	6.00e-152	530.00
IUUC-Ggo-045422	Gorilla gorilla	90.84	0.00e+00	709.00
IUUC-Hsa-045683	Homo sapiens	100.00	0.00e+00	806.00
IUUC-Hvu-047457	Hordeum vulgare	67.18	5.00e-76	276.00
IUUC-Itr-047950	Ictidomys tridecemlineatus	100.00	0.00e+00	806.00
IUUC-Kpa-049119	Komagataella pastoris	35.99	2.00e-64	239.00
IUUC-Lpe-051337	Leersia perrieri	67.10	6.00e-152	530.00
IUUC-Loc-052473	Lepisosteus oculatus	97.69	0.00e+00	792.00
IUUC-Lma-053275	Leptosphaeria maculans	44.53	1.00e-57	216.00
IUUC-Laf-054114	Loxodonta africana	100.00	0.00e+00	806.00
IUUC-Mcc-055648	Macaca mulatta	100.00	0.00e+00	806.00
IUUC-Meu-056490	Macropus eugenii	100.00	0.00e+00	806.00
IUUC-Mor-056947	Magnaporthe oryzae	49.62	1.00e-105	376.00
IUUC-Mpo-057602	Magnaporthe poae	48.22	2.00e-106	379.00
IUUC-Mtr-057853	Medicago truncatula	65.97	5.00e-152	530.00
IUUC-Mla-058884	Melampsora laricipopulina	52.32	2.00e-118	418.00
IUUC-Mga-059452	Meleagris gallopavo	100.00	0.00e+00	806.00
IUUC-Mvi-060450	Microbotryum violaceum	57.07	2.00e-125	442.00
IUUC-Mmr-060678	Microcebus murinus	100.00	0.00e+00	764.00
IUUC-Mdo-062450	Monodelphis domestica	99.46	0.00e+00	766.00
IUUC-Mmu-063282	Mus musculus	100.00	0.00e+00	806.00
IUUC-Mac-065480	Musa acuminata	65.96	2.00e-149	521.00
IUUC-Mpu-066529	Mustela putorius furo	99.23	0.00e+00	801.00
IUUC-Mlu-068072	Myotis lucifugus	100.00	0.00e+00	806.00
IUUC-Nfi-068374	Neosartorya fischeri	52.49	2.00e-113	402.00
IUUC-Ncr-068794	Neurospora crassa	46.37	9.00e-103	366.00
IUUC-Nle-069577	Nomascus leucogenys	100.00	0.00e+00	806.00
IUUC-Opr-070245	Ochotona princeps	83.08	1.00e-180	625.00
IUUC-Ont-071809	Oreochromis niloticus	96.66	0.00e+00	784.00
IUUC-Oan-072839	Ornithorhynchus anatinus	99.74	0.00e+00	801.00
IUUC-Ocu-073968	Oryctolagus cuniculus	100.00	0.00e+00	805.00
IUUC-Oba-075719	Oryza barthii	59.39	4.00e-130	458.00
IUUC-Obr-076859	Oryza brachyantha	66.67	5.00e-150	523.00
IUUC-Ogl-077920	Oryza glaberrima	66.58	2.00e-151	528.00
IUUC-Ogu-078048	Oryza glumaepatula	59.39	2.00e-129	455.00
IUUC-Oin-079960	Oryza indica	56.27	3.00e-124	438.00
IUUC-Olo-080553	Oryza longistaminata	56.80	1.00e-125	443.00
IUUC-Ome-081835	Oryza meridionalis	66.58	4.00e-152	531.00
IUUC-Oni-082494	Oryza nivara	59.39	1.00e-129	456.00
IUUC-Opu-083913	Oryza punctata	63.73	2.00e-140	491.00
IUUC-Oru-084666	Oryza rufipogon	66.58	2.00e-151	528.00
IUUC-Osa-085884	Oryza sativa	66.58	2.00e-151	528.00
IUUC-Ola-086664	Oryzias latipes	96.67	0.00e+00	785.00
IUUC-Olu-087579	Ostreococcus lucimarinus	62.50	2.00e-132	465.00
IUUC-Oga-088364	Otolemur garnettii	90.31	0.00e+00	719.00
IUUC-Oar-089652	Ovis aries	100.00	0.00e+00	806.00
IUUC-Pma-094307	Petromyzon marinus	93.73	0.00e+00	756.00
IUUC-Pno-095153	Phaeosphaeria nodorum	48.79	6.00e-98	350.00
IUUC-Ppa-095800	Physcomitrella patens	67.02	3.00e-157	547.00
IUUC-Pfo-097376	Poecilia formosa	96.41	0.00e+00	780.00
IUUC-Pab-097697	Pongo abelii	100.00	0.00e+00	806.00
IUUC-Pop-099709	Populus trichocarpa	65.44	1.00e-151	529.00
IUUC-Pca-100642	Procavia capensis	88.89	0.00e+00	666.00
IUUC-Ppe-101212	Prunus persica	64.95	6.00e-152	530.00
IUUC-Pva-102253	Pteropus vampyrus	100.00	0.00e+00	806.00
IUUC-Pgr-103441	Puccinia graminis	52.97	9.00e-112	396.00
IUUC-Pte-104332	Pyrenophora teres	48.66	6.00e-100	357.00
IUUC-Pyt-104516	Pyrenophora triticirepentis	48.66	4.00e-100	357.00
IUUC-Rno-105678	Rattus norvegicus	100.00	0.00e+00	806.00
IUUC-Sce-106364	Saccharomyces cerevisiae	37.50	5.00e-64	238.00
IUUC-Sha-106663	Sarcophilus harrisii	100.00	0.00e+00	806.00
IUUC-Sja-108001	Schizosaccharomyces japonicus	46.37	3.00e-95	341.00
IUUC-Spo-108145	Schizosaccharomyces pombe	51.30	1.00e-108	386.00
IUUC-Smo-109159	Selaginella moellendorffii	64.19	3.00e-152	531.00
IUUC-Sit-110144	Setaria italica	66.49	2.00e-142	498.00
IUUC-Sly-111680	Solanum lycopersicum	65.96	1.00e-151	529.00
IUUC-Stu-111931	Solanum tuberosum	65.69	4.00e-150	523.00
IUUC-Sbi-114637	Sorghum bicolor	66.75	6.00e-150	523.00
IUUC-Sre-114980	Sporisorium reilianum	53.28	3.00e-125	441.00
IUUC-Ssc-115711	Sus scrofa	100.00	0.00e+00	805.00
IUUC-Tgu-116925	Taeniopygia guttata	99.74	0.00e+00	805.00
IUUC-Tru-117549	Takifugu rubripes	96.16	0.00e+00	775.00
IUUC-Tni-120398	Tetraodon nigroviridis	96.16	0.00e+00	779.00
IUUC-Tca-121841	Theobroma cacao	66.75	1.00e-152	532.00
IUUC-Tre-122190	Trichoderma reesei	49.35	4.00e-102	364.00
IUUC-Tvi-122304	Trichoderma virens	48.58	1.00e-110	392.00
IUUC-Tae-124648	Triticum aestivum	65.80	1.00e-142	499.00
IUUC-Tur-126850	Triticum urartu	63.55	5.00e-117	414.00
IUUC-Tme-126949	Tuber melanosporum	53.60	8.00e-117	413.00
IUUC-Tbe-127459	Tupaia belangeri	91.98	0.00e+00	653.00
IUUC-Uma-129424	Ustilago maydis	52.79	4.00e-125	441.00
IUUC-Vda-129873	Verticillium dahliae	48.72	8.00e-112	396.00
IUUC-Vpa-130079	Vicugna pacos	99.74	0.00e+00	805.00
IUUC-Vvi-131585	Vitis vinifera	65.70	3.00e-150	524.00
IUUC-Xma-133066	Xiphophorus maculatus	96.66	0.00e+00	784.00
IUUC-Yli-134334	Yarrowia lipolytica	38.32	1.00e-69	256.00
IUUC-Zma-135710	Zea mays	65.96	9.00e-143	499.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence