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Tag Content
iUUCD ID IUUC-Mtr-058204
Ensembl Protein ID AES91398
UniProt Accession G7JU56; A0A0C3X576; G7JU56_MEDTR
Genbank Protein ID AES91398.2
Protein Name LisH-SSDP-WD40
Genbank Nucleotide ID CM001220
Gene Name MTR_4g113080
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
MTR_4g113080 AES91398 AES91398
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.70e-21 75.2 545 575
UBD/Beta-Prp 2.00e-45 156.7 498 729
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
    Ht ++t+++f ++ +++++s D+t+kvWD+
   Q: 545 HTQRITDVRFsPSmFYVATSSADKTVKVWDV 575
    9*********976699**************7 PP
   


   UBD/Beta-Prp

   S: 46   rslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvh 146
    + + +++v ++ fs+dgk++vtg++D+ + +w + + +tl++h++++++++fsps ++++ s+d+t++vwd+++ + t++g++ +v ++ +h
   Q: 498 KHILASSDKVDCCHFSSDGKLFVTGGRDKKASLWCTKLFNLKSTLEEHTQRITDVRFSPSMFYVATSSADKTVKVWDVNNLGHSLRTFTGNT-AVLSLDFH 597
    556778899***********************************************************************888887***999.8899**** PP
   S: 147 pdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsir 247
    p++ l+ +++++ +r+W++++g+++ ++g v+ + f++ +++++ ++ + ++d +t +c +l+gh + v+sv ++ +++++s+ + ++
   Q: 598 PSKHGLICSCDNKEIRFWNIANGSCIGIFKG----GVTQVRFQPGLGKVLAAAVNNLILMFDTETLSCRFKLQGHMSLVRSVCWHSSGNYMASV-CNDLVK 693
    ***99999999******************87....9**********************************************************.5779** PP
   S: 248 iW....dlrsgdllktlqlhnssvisvavlsfgdnvlv 281
    +W d+r g ++++l+ ++s++ + + ++++n+l+
   Q: 694 LWaigsDCR-GACITQLNATESKFKTCVF-HPSHNILI 729
    **9998865.8899999999988888888.99999975 PP
   

Organism Medicago truncatula
Protein Sequence
(Fasta)
MSQSKYDEPD KAYEIAELIA IFVTLFCSFF LCTRLDAFIY DYLVKNQLYE TARIFHDEGN 60
VEQNIVMDAP GGSLFEWWSV FWELFMAKQG FSHSEPALSY LKAQEMRKQE EEIERIQFIL 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mtr-058204|E3,WD_repeat;UBD,Beta-Prp|Medicago truncatula
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTCTCAAT CCAAATACGA TGAACCTGAT AAAGCGTATG AAATCGCTGA ACTCATCGCC 60
ATTTTTGTTA CCTTGTTTTG TTCCTTTTTT CTTTGTACAC GGTTTCTCTC GCATTGATGT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mtr-058204|E3,WD_repeat;UBD,Beta-Prp|Medicago truncatula
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0677--Repeat
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane

KEGG mtr:MTR_4g113080
Created Date 25-Jun-2017

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