iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sha-107003

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AEFK01191600

Gene Name

NEDD1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSHAG00000016136.1	ENSSHAT00000019167.1	ENSSHAP00000019011.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.70e-21	73.9	81	111
UBD/Beta-Prp	9.10e-46	156.5	81	300

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 7    tclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           tc+++ s+  +lvsG+ D+t+ +WDl++ +l
   Q: 81   TCINLnSTsMYLVSGGLDNTVNIWDLKSKRL 111
           79999866699***************98776 PP

UBD/Beta-Prp

   S: 14   tcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstg.kcvhtlkghedsvlsls 101
           tc+     + +l++g+ d+t+ +wd++++ l rsl++h++evt+v+f+ ++ ++++gs  + i + ++ t+ + +   +g+ +s++ l+
   Q: 81   TCINLNSTSMYLVSGGLDNTVNIWDLKSKRLHRSLKDHKDEVTCVTFNWNDCYIASGSISGEIILHSITTNlSSTPFGHGNGQSIRQLK 169
           5777778899****************************************99*************99986514555556999******* PP
   S: 102  fsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
           +s  +++ l s s+  ++ +wd+++++ +++++  h++  ++++++p +  llv+ +lD+ + l+d +++  lrtl    + + + ++f
   Q: 170  YSLfKKSLLGSVSDNGVVTLWDVNSQSPYHNFECSHKAPASGISFSPVNdMLLVTIGLDKRIILYDTASKIQLRTLV--AEAPLTAVDF 256
           **9777888899*************************************999************************6..599******* PP
   S: 189  dsngkelvsgsldgtvklwdlq.tgecvrtlnghtdnvksvrfs 231
            ++g  l+ gs  g++  +dl+  ++ v+t+++h++ v+++ f 
   Q: 257  MPDGATLAIGSSRGKIYQYDLRmLNSPVKTVHAHKTSVQCITFQ 300
           **********************97778*************9987 PP

Organism

Sarcophilus harrisii

Protein Sequence
(Fasta)

MQESIRFASS GDDIKIWESS SMTVVEQFNP HSSSLGISSL CWSSNNNFLV TASASGDKIV 60
ISSCKCKPVP LLELAEGQKQ TCINLNSTSM YLVSGGLDNT VNIWDLKSKR LHRSLKDHKD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGCAGTCAT GCAAGAAAGC ATCAGATTTG CCTCTTCGGG GGATGATATT AAAATATGGG 60
AGTCATCCTC TATGACTGTG GTGGAGCAGT TCAATCCTCA TTCATCATCA CTTGGAATCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0045177--C:apical part of cell
GO:0005814--C:centriole
GO:0036064--C:ciliary basal body
GO:0000242--C:pericentriolar material
GO:0000922--C:spindle pole

KEGG

shr:100931862

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000871	Aegilops tauschii	38.39	3.00e-18	87.40
IUUC-Aml-002397	Ailuropoda melanoleuca	71.54	0.00e+00	942.00
IUUC-Atr-002464	Amborella trichopoda	31.51	9.00e-39	155.00
IUUC-Apl-003870	Anas platyrhynchos	63.30	0.00e+00	829.00
IUUC-Aca-004925	Anolis carolinensis	59.40	0.00e+00	769.00
IUUC-Aly-005931	Arabidopsis lyrata	32.36	3.00e-40	159.00
IUUC-Ath-006681	Arabidopsis thaliana	32.36	4.00e-40	159.00
IUUC-Ame-010906	Astyanax mexicanus	66.89	2.00e-116	412.00
IUUC-Bta-013389	Bos taurus	73.03	0.00e+00	971.00
IUUC-Bdi-014340	Brachypodium distachyon	31.07	6.00e-38	152.00
IUUC-Bol-015773	Brassica oleracea	31.51	8.00e-40	158.00
IUUC-Bra-016623	Brassica rapa	31.51	2.00e-39	157.00
IUUC-Cja-019541	Callithrix jacchus	73.47	0.00e+00	986.00
IUUC-Cfa-021218	Canis familiaris	70.94	0.00e+00	932.00
IUUC-Cpo-021697	Cavia porcellus	68.01	0.00e+00	912.00
IUUC-Csa-023620	Chlorocebus sabaeus	73.62	0.00e+00	999.00
IUUC-Cho-025105	Choloepus hoffmanni	69.01	0.00e+00	735.00
IUUC-Cin-025293	Ciona intestinalis	41.14	5.00e-64	238.00
IUUC-Csv-026234	Ciona savignyi	36.26	6.00e-52	197.00
IUUC-Dre-028251	Danio rerio	65.22	4.00e-107	382.00
IUUC-Dno-029281	Dasypus novemcinctus	71.86	0.00e+00	786.00
IUUC-Dor-031020	Dipodomys ordii	56.64	3.00e-127	448.00
IUUC-Ete-033113	Echinops telfairi	73.98	7.00e-165	573.00
IUUC-Eca-034230	Equus caballus	72.62	0.00e+00	947.00
IUUC-Eeu-034671	Erinaceus europaeus	58.77	7.00e-178	616.00
IUUC-Fca-035775	Felis catus	72.88	0.00e+00	971.00
IUUC-Fal-037557	Ficedula albicollis	60.44	0.00e+00	749.00
IUUC-Gmo-038586	Gadus morhua	57.91	3.00e-105	375.00
IUUC-Gga-040153	Gallus gallus	63.80	0.00e+00	838.00
IUUC-Gac-041385	Gasterosteus aculeatus	58.33	3.00e-106	379.00
IUUC-Gma-042844	Glycine max	33.55	4.00e-44	172.00
IUUC-Ggo-044576	Gorilla gorilla	74.37	0.00e+00	1019.00
IUUC-Hsa-046198	Homo sapiens	74.22	0.00e+00	1018.00
IUUC-Hvu-047794	Hordeum vulgare	38.39	9.00e-19	85.90
IUUC-Lch-050561	Latimeria chalumnae	49.85	1.00e-160	559.00
IUUC-Lpe-051469	Leersia perrieri	32.03	2.00e-37	150.00
IUUC-Loc-052816	Lepisosteus oculatus	49.79	9.00e-162	563.00
IUUC-Laf-053880	Loxodonta africana	71.73	0.00e+00	915.00
IUUC-Mcc-054977	Macaca mulatta	73.77	0.00e+00	1002.00
IUUC-Meu-056141	Macropus eugenii	76.48	0.00e+00	781.00
IUUC-Mtr-058441	Medicago truncatula	34.98	9.00e-44	171.00
IUUC-Mga-060141	Meleagris gallopavo	62.31	0.00e+00	807.00
IUUC-Mmr-061201	Microcebus murinus	72.43	0.00e+00	991.00
IUUC-Mdo-061855	Monodelphis domestica	88.66	0.00e+00	1169.00
IUUC-Mmu-064342	Mus musculus	69.60	0.00e+00	924.00
IUUC-Mac-065368	Musa acuminata	35.89	4.00e-38	153.00
IUUC-Mpu-066191	Mustela putorius furo	71.09	0.00e+00	939.00
IUUC-Mlu-067310	Myotis lucifugus	71.68	0.00e+00	941.00
IUUC-Nle-069990	Nomascus leucogenys	74.22	0.00e+00	1021.00
IUUC-Opr-070336	Ochotona princeps	65.13	0.00e+00	825.00
IUUC-Ont-071675	Oreochromis niloticus	43.03	6.00e-139	487.00
IUUC-Oan-072772	Ornithorhynchus anatinus	74.14	0.00e+00	809.00
IUUC-Ocu-074095	Oryctolagus cuniculus	73.17	0.00e+00	971.00
IUUC-Oba-075327	Oryza barthii	32.01	1.00e-37	152.00
IUUC-Obr-076119	Oryza brachyantha	32.01	4.00e-38	153.00
IUUC-Ogl-077820	Oryza glaberrima	31.68	6.00e-37	149.00
IUUC-Ogu-078679	Oryza glumaepatula	33.21	1.00e-37	151.00
IUUC-Oin-079891	Oryza indica	32.01	8.00e-38	152.00
IUUC-Olo-080414	Oryza longistaminata	35.19	1.00e-37	151.00
IUUC-Ome-081888	Oryza meridionalis	32.34	6.00e-38	152.00
IUUC-Oni-082417	Oryza nivara	32.01	1.00e-37	151.00
IUUC-Opu-083393	Oryza punctata	32.01	7.00e-38	152.00
IUUC-Oru-084698	Oryza rufipogon	32.01	6.00e-38	152.00
IUUC-Osa-086121	Oryza sativa	32.01	1.00e-37	151.00
IUUC-Ola-086806	Oryzias latipes	41.63	3.00e-138	485.00
IUUC-Olu-087591	Ostreococcus lucimarinus	23.13	2.00e-15	77.00
IUUC-Oga-088622	Otolemur garnettii	73.47	0.00e+00	989.00
IUUC-Oar-090391	Ovis aries	69.28	0.00e+00	818.00
IUUC-Ptr-091036	Pan troglodytes	73.92	0.00e+00	1013.00
IUUC-Pan-092576	Papio anubis	73.62	0.00e+00	1000.00
IUUC-Psi-093450	Pelodiscus sinensis	67.75	0.00e+00	866.00
IUUC-Pma-094101	Petromyzon marinus	55.30	1.00e-103	369.00
IUUC-Ppa-095636	Physcomitrella patens	31.07	7.00e-40	159.00
IUUC-Pfo-097142	Poecilia formosa	48.53	5.00e-110	391.00
IUUC-Pab-097829	Pongo abelii	74.07	0.00e+00	1014.00
IUUC-Pop-099687	Populus trichocarpa	33.33	8.00e-42	165.00
IUUC-Pca-100217	Procavia capensis	70.98	3.00e-167	582.00
IUUC-Ppe-101502	Prunus persica	33.66	3.00e-43	169.00
IUUC-Pva-102736	Pteropus vampyrus	70.49	0.00e+00	948.00
IUUC-Rno-104977	Rattus norvegicus	69.30	0.00e+00	884.00
IUUC-Smo-109328	Selaginella moellendorffii	32.68	2.00e-38	154.00
IUUC-Sit-109796	Setaria italica	32.12	4.00e-38	153.00
IUUC-Sly-110941	Solanum lycopersicum	32.48	2.00e-39	157.00
IUUC-Stu-112314	Solanum tuberosum	33.94	4.00e-40	159.00
IUUC-Sar-112926	Sorex araneus	66.22	0.00e+00	865.00
IUUC-Sbi-113822	Sorghum bicolor	34.29	1.00e-28	120.00
IUUC-Ssc-116242	Sus scrofa	78.55	5.00e-165	573.00
IUUC-Tgu-116765	Taeniopygia guttata	62.24	0.00e+00	782.00
IUUC-Tru-117738	Takifugu rubripes	42.48	6.00e-149	520.00
IUUC-Tsy-118856	Tarsius syrichta	70.24	0.00e+00	886.00
IUUC-Tni-120871	Tetraodon nigroviridis	43.77	6.00e-150	524.00
IUUC-Tca-120965	Theobroma cacao	32.56	2.00e-38	153.00
IUUC-Tae-123957	Triticum aestivum	31.05	2.00e-38	154.00
IUUC-Tur-126840	Triticum urartu	31.05	3.00e-38	153.00
IUUC-Ttr-128551	Tursiops truncatus	71.54	0.00e+00	942.00
IUUC-Vpa-130324	Vicugna pacos	73.62	0.00e+00	957.00
IUUC-Vvi-131699	Vitis vinifera	33.01	3.00e-41	163.00
IUUC-Xtr-131956	Xenopus tropicalis	60.03	0.00e+00	809.00
IUUC-Xma-132982	Xiphophorus maculatus	47.72	4.00e-109	388.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence