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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007218
UUCD1 version UUC-ArT-00661
Ensembl Protein ID AT3G01460.1
UniProt Accession Q9SGH2; Q9SSA6; MBD9_ARATH
Genbank Protein ID AAF01531.1; AAF24616.1; AEE73669.1
Protein Name Methyl-CpG-binding domain-containing protein 9; Histone acetyl transferase MBD9; Methyl-CpG-binding protein MBD9
Genbank Nucleotide ID AC009325; AC010870; CP002686
Gene Name MBD9; At3g01460; F4P13.1; T13O15.10
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G01460 AT3G01460.1 AT3G01460.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINTMentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 3.70e-12 47.1 1289 1335
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           vC+vCg  ++d+ s++ C+ C+  +H  Cl+++     p+ + w+Cp+C 
   Q: 1289 VCKVCGVDKDDD-SVLLCDTCDAEYHTYCLNPP-LIRIPDGN-WYCPSCV 1335
           8*****999977.7*******************.9******6.******6 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Probable transcriptional regulator that acts as a histone acetyltransferase. Mediates the acetylation of histone H3 and H4 of target loci (e.g. FLC). Involved in an auxin-independent regulation of shoot branching and flowering time.
 Probable transcriptional regulator that acts as a histone acetyltransferase. Mediates the acetylation of histone H3 and H4 of target loci (e.g. FLC). Involved in an auxin-independent regulation of shoot branching and flowering time.
Protein Sequence
(Fasta)
MEPTDSTNEQ LGDTKTAAVK EESRSFLGID LNEIPTGATL GGGCTAGQDD DGEYEPVEVV 60
RSIHDNPDPA PGAPAEVPEP DRDASCGACG RPESIELVVV CDACERGFHM SCVNDGVEAA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007218|E3,PHD|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAAAAAAGAA AAAAATTTAA TAAGAAAACC TCTTTTTCTC GCAATTTGGT TTTGTTTTCA 60
ATCTTCTTCT TCTTCTTCTT CGTCTTCAAT GCAAACAATG CTCGATTCCA TTAACCTAAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007218|E3,PHD|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0103--Bromodomain
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0808--Transferase
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR001487--Bromodomain
IPR016177--DNA-bd_dom
IPR003889--FYrich_C
IPR003888--FYrich_N
IPR001739--Methyl_CpG_DNA-bd
IPR028942--WHIM1_dom
IPR028941--WHIM2_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS51543--FYRC
PS51542--FYRN
PS50982--MBD
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF05965--FYRC
PF05964--FYRN
PF01429--MBD
PF00628--PHD
PF15612--WHIM1
PF15613--WSD
SMART

SM00249--PHD
Gene Ontology

GO:0005720--C:nuclear heterochromatin
GO:0005634--C:nucleus
GO:0009506--C:plasmodesma
GO:0004402--F:histone acetyltransferase activity
GO:0042393--F:histone binding
GO:0008327--F:methyl-CpG binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0016573--P:histone acetylation
GO:0043966--P:histone H3 acetylation
GO:0043967--P:histone H4 acetylation
GO:0010216--P:maintenance of DNA methylation
GO:0048573--P:photoperiodism, flowering
GO:0016567--P:protein ubiquitination
GO:0090308--P:regulation of methylation-dependent chromatin silencing
GO:0006355--P:regulation of transcription, DNA-templated
GO:0010223--P:secondary shoot formation
GO:0006351--P:transcription, DNA-templated
KEGG ath:AT3G01460
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000077 Aegilops tauschii 41.76 5.00e-167 582.00
IUUC-Aml-001963 Ailuropoda melanoleuca 36.11 4.00e-14 73.90
IUUC-Atr-002838 Amborella trichopoda 40.45 0.00e+00 1108.00
IUUC-Apl-003770 Anas platyrhynchos 36.45 8.00e-14 72.80
IUUC-Aly-006097 Arabidopsis lyrata 91.31 0.00e+00 3803.00
IUUC-Acl-008162 Aspergillus clavatus 46.81 2.00e-12 68.60
IUUC-Afl-008625 Aspergillus flavus 48.94 2.00e-12 68.60
IUUC-Afu-008796 Aspergillus fumigatus 51.06 6.00e-13 70.10
IUUC-Ani-009139 Aspergillus nidulans 48.94 5.00e-13 70.50
IUUC-Aor-010155 Aspergillus oryzae 48.94 2.00e-12 68.60
IUUC-Ate-010453 Aspergillus terreus 44.68 8.00e-12 66.60
IUUC-Ame-010620 Astyanax mexicanus 35.85 4.00e-15 77.00
IUUC-Bta-012902 Bos taurus 54.00 5.00e-13 70.50
IUUC-Bci-013992 Botrytis cinerea 41.67 8.00e-11 63.20
IUUC-Bdi-014742 Brachypodium distachyon 35.38 5.00e-146 511.00
IUUC-Bol-015506 Brassica oleracea 77.54 0.00e+00 3248.00
IUUC-Bra-017998 Brassica rapa 80.19 0.00e+00 3305.00
IUUC-Cja-019050 Callithrix jacchus 36.45 7.00e-14 73.20
IUUC-Cfa-021015 Canis familiaris 36.45 8.00e-14 72.80
IUUC-Cpo-022340 Cavia porcellus 36.45 8.00e-14 72.80
IUUC-Cre-022637 Chlamydomonas reinhardtii 53.33 4.00e-09 51.60
IUUC-Csa-023441 Chlorocebus sabaeus 36.45 8.00e-14 73.20
IUUC-Cin-025321 Ciona intestinalis 33.96 1.00e-11 65.50
IUUC-Csv-026185 Ciona savignyi 42.11 4.00e-05 44.30
IUUC-Cgl-026613 Colletotrichum gloeosporioides 34.92 2.00e-09 58.50
IUUC-Cne-026801 Cryptococcus neoformans 48.94 3.00e-13 70.10
IUUC-Dno-029473 Dasypus novemcinctus 54.00 4.00e-13 70.90
IUUC-Dse-031479 Dothistroma septosporum 40.82 6.00e-10 60.50
IUUC-Ete-033144 Echinops telfairi 54.00 4.00e-13 70.90
IUUC-Eca-034370 Equus caballus 36.45 9.00e-14 72.80
IUUC-Fca-035494 Felis catus 36.45 8.00e-14 72.80
IUUC-Fso-038127 Fusarium solani 30.89 7.00e-12 66.60
IUUC-Gac-041825 Gasterosteus aculeatus 35.85 4.00e-15 77.00
IUUC-Gma-042823 Glycine max 45.20 0.00e+00 1544.00
IUUC-Ggo-044856 Gorilla gorilla 36.45 6.00e-14 73.20
IUUC-Hsa-045888 Homo sapiens 36.45 8.00e-14 73.20
IUUC-Hvu-047583 Hordeum vulgare 33.99 1.00e-129 457.00
IUUC-Itr-048297 Ictidomys tridecemlineatus 36.45 8.00e-14 72.80
IUUC-Lpe-050785 Leersia perrieri 36.81 0.00e+00 1009.00
IUUC-Mcc-055505 Macaca mulatta 36.45 8.00e-14 72.80
IUUC-Mpo-057317 Magnaporthe poae 38.10 7.00e-09 56.60
IUUC-Mtr-058285 Medicago truncatula 44.35 0.00e+00 1543.00
IUUC-Mmr-060863 Microcebus murinus 36.45 8.00e-14 72.80
IUUC-Mmu-063944 Mus musculus 36.45 6.00e-14 73.60
IUUC-Mac-065069 Musa acuminata 43.28 0.00e+00 853.00
IUUC-Mpu-066349 Mustela putorius furo 54.00 5.00e-13 70.50
IUUC-Nfi-068430 Neosartorya fischeri 51.06 6.00e-13 70.10
IUUC-Ncr-068763 Neurospora crassa 40.82 4.00e-08 53.90
IUUC-Nle-069256 Nomascus leucogenys 36.45 7.00e-14 73.20
IUUC-Opr-071002 Ochotona princeps 54.00 4.00e-13 70.50
IUUC-Oan-073568 Ornithorhynchus anatinus 36.45 8.00e-14 72.80
IUUC-Ocu-073961 Oryctolagus cuniculus 36.45 8.00e-14 72.80
IUUC-Oba-075854 Oryza barthii 38.42 0.00e+00 1111.00
IUUC-Obr-076343 Oryza brachyantha 37.24 0.00e+00 1102.00
IUUC-Ogl-077886 Oryza glaberrima 38.08 1.00e-161 563.00
IUUC-Ogu-078887 Oryza glumaepatula 38.45 0.00e+00 1110.00
IUUC-Olo-080668 Oryza longistaminata 38.49 0.00e+00 1112.00
IUUC-Ome-081800 Oryza meridionalis 38.35 0.00e+00 1111.00
IUUC-Oni-082593 Oryza nivara 38.45 0.00e+00 1110.00
IUUC-Opu-083363 Oryza punctata 37.95 0.00e+00 1103.00
IUUC-Oru-084298 Oryza rufipogon 38.32 0.00e+00 1105.00
IUUC-Osa-085487 Oryza sativa 36.59 2.00e-145 509.00
IUUC-Ola-087076 Oryzias latipes 40.24 5.00e-13 70.50
IUUC-Oga-088350 Otolemur garnettii 54.00 5.00e-13 70.10
IUUC-Oar-090162 Ovis aries 36.45 9.00e-14 72.80
IUUC-Ptr-090816 Pan troglodytes 36.45 8.00e-14 73.20
IUUC-Pan-092764 Papio anubis 36.45 7.00e-14 73.20
IUUC-Pma-094137 Petromyzon marinus 32.35 2.00e-12 68.20
IUUC-Pno-094879 Phaeosphaeria nodorum 51.22 3.00e-11 64.30
IUUC-Ppa-095893 Physcomitrella patens 35.73 2.00e-95 344.00
IUUC-Pab-097854 Pongo abelii 36.45 8.00e-14 72.80
IUUC-Ppe-101198 Prunus persica 45.47 0.00e+00 1697.00
IUUC-Pgr-103434 Puccinia graminis 53.06 9.00e-17 80.50
IUUC-Pte-104195 Pyrenophora teres 51.06 9.00e-14 72.80
IUUC-Pyt-104566 Pyrenophora triticirepentis 51.06 9.00e-14 72.80
IUUC-Rno-105574 Rattus norvegicus 36.45 7.00e-14 73.20
IUUC-Sce-106207 Saccharomyces cerevisiae 44.23 9.00e-12 64.70
IUUC-Sja-107970 Schizosaccharomyces japonicus 32.35 8.00e-12 66.20
IUUC-Spo-108283 Schizosaccharomyces pombe 55.56 4.00e-13 70.50
IUUC-Ssl-108489 Sclerotinia sclerotiorum 41.67 7.00e-11 63.50
IUUC-Sit-110633 Setaria italica 38.34 0.00e+00 1027.00
IUUC-Sly-111298 Solanum lycopersicum 26.67 2.00e-10 62.00
IUUC-Sar-113477 Sorex araneus 36.45 7.00e-14 73.20
IUUC-Sbi-113926 Sorghum bicolor 51.11 2.00e-12 62.80
IUUC-Tca-121595 Theobroma cacao 48.57 0.00e+00 1845.00
IUUC-Tre-122213 Trichoderma reesei 37.14 2.00e-11 64.70
IUUC-Tvi-122263 Trichoderma virens 37.14 5.00e-11 63.50
IUUC-Tae-123821 Triticum aestivum 37.60 0.00e+00 1029.00
IUUC-Tur-126242 Triticum urartu 41.23 2.00e-165 577.00
IUUC-Tme-127087 Tuber melanosporum 45.83 2.00e-10 62.00
IUUC-Tbe-127890 Tupaia belangeri 36.45 8.00e-14 72.80
IUUC-Ttr-128546 Tursiops truncatus 36.45 7.00e-14 73.20
IUUC-Uma-129590 Ustilago maydis 43.14 6.00e-11 63.90
IUUC-Vpa-130432 Vicugna pacos 36.45 6.00e-14 73.20
IUUC-Vvi-130929 Vitis vinifera 43.80 0.00e+00 1538.00
IUUC-Zma-135560 Zea mays 37.02 0.00e+00 1037.00
Created Date 25-Jun-2017

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