iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007223

UUCD1 version

UUC-ArT-00910

Ensembl Protein ID

AT4G25440.1

UniProt Accession

Q9FNZ2; C3H48_ARATH

Genbank Protein ID

CAC19847.1; AEE85060.1; ANM67105.1; ANM67106.1; ABG48478.1

Protein Name

Zinc finger CCCH domain-containing protein 48; Zinc finger CCCH domain and WD40 repeat-containing protein 1

Genbank Nucleotide ID

AJ252063; AL079350; CP002687; CP002687; BT026122

Gene Name

ZFWD1; At4g25440; T30C3.6

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G25440	AT4G25440.1	AT4G25440.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-28	98.5	142	179

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+  vt++a+ s+ + l ++s D t+++WD  +g ++
   Q: 142  GHQKVVTGIALpSGsDKLYTASKDETVRIWDCASGQCT 179
           89*********966799***************999986 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDLDMNGGNK RVFQRLGGGS NRPTTDSNQK VCFHWRAGRC NRYPCPYLHR ELPGPGSGPV 60
AASSNKRVAD ESGFAGPSHR RGPGFSGTAN NWGRFGGNRT VTKTEKLCKF WVDGNCPYGD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCGCTTGAC ATCTTCTTCC AATTTTGATT TATCAAAGAA AACTCCTTTG TGAGAGATTA 60
TTTATGTACT CTTGATTCAG AGAGGTAAAT TCTGTTAGGG GTTCGTTCGA TTTTCGCGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0003677--F:DNA binding
GO:0046872--F:metal ion binding

KEGG

ath:AT4G25440

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006378	Arabidopsis lyrata	95.61	0.00e+00	779.00
IUUC-Bra-017102	Brassica rapa	87.73	0.00e+00	756.00
IUUC-Gma-042894	Glycine max	66.20	5.00e-166	576.00
IUUC-Mtr-058068	Medicago truncatula	63.59	2.00e-155	541.00
IUUC-Mac-065071	Musa acuminata	60.09	2.00e-158	551.00
IUUC-Osa-085619	Oryza sativa	53.31	6.00e-106	376.00
IUUC-Pop-099994	Populus trichocarpa	67.42	1.00e-173	601.00
IUUC-Sit-109731	Setaria italica	58.88	2.00e-141	494.00
IUUC-Sly-111514	Solanum lycopersicum	64.60	5.00e-160	556.00
IUUC-Stu-112646	Solanum tuberosum	64.50	6.00e-165	572.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence