iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099244

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000351

Gene Name

POPTRDRAFT_253741; POPTR_0015s13760g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s13760	POPTR_0015s13760.1	POPTR_0015s13760.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.40e-26	89.9	167	203
UBD/Beta-Prp	2.90e-40	139.4	160	407

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+  ++++a+ s+ + l +Gs D t++vWD  +g +
   Q: 167  GHQKVISGIALpSGsDKLYTGSKDETVRVWDCQSGQC 203
           89*********966799**************999988 PP

UBD/Beta-Prp

   S: 43   kllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetl 133
           +ll +l+gh++ ++ + + + ++ l tgs+D+t++vwd ++g+c+ +++    +v ++ +   g ++ +G+  ++++ w+++t++ l+  l
   Q: 160  SLLTQLEGHQKVISGIALPSGSDKLYTGSKDETVRVWDCQSGQCMGVIN-LGGEVGCMISE--GPWIFVGT-PNVVKAWNTQTNTDLS--L 244
           46899*******************************************9.99999998655..59*****9.89*************8..8 PP
   S: 134  sghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl.....tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtln 219
           +g  g v ++vv    +ll++G+ D+ + +W+   +   + +       +h+ +v sl +  n  +l sgs+d ++k+w+l+t +cv+tl+
   Q: 245  TGPVGQVYTLVVGN--DLLFAGTQDGSILVWKF--NAATYNFepaasLNDHKMAVVSLVVGAN--RLYSGSMDHSIKVWSLETLQCVQTLK 329
           88877777777776..7**************66..555555555888666************5..7************************* PP
   S: 220  ghtdnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn..ssvisvavlsfgdnvlvlgse.dskvniwklk 295
           +ht+ v s+  +  +++l+s+s D++i++W  ++sg+l  t+++++    ++ + +++++++ ++l+s+ ds+v++++l 
   Q: 330  DHTSVVMSLLCW--EQFLLSCSLDQTIKVWaATESGNLEVTYTHKEehGLLTLCGMHDLEGKPILLCSSnDSSVHLFDLP 407
           ************..****************96666666666666552266667777****9999999888*******985 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDFDYNGGNT TNTNKRVFNR LGGGQSANDT SNHNHLQQNQ KVCYHWRAGR CNRFPCPFLH 60
RELSAPPTHA AVNGGVGAKR GFVGNDSSSS SFSGRRGNNG TNGNNSNYSN SWGRFGNKGD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAATCCATA TATCAATCAA TCACCAACCT CGTGTCGATG TCCCAAAACA ACAGGAAAAA 60
TAATATATCC TCCTAAAAGA GGATGATACA GTAAATTCCA CATCATCGTC AGCTTGACGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR000571--Znf_CCCH

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50103--ZF_C3H1

Pfam

PF00400--WD40
PF00642--zf-CCCH

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40
SM00356--ZnF_C3H1

Gene Ontology

GO:0046872--F:metal ion binding

KEGG

pop:POPTR_0015s13760g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000399	Aegilops tauschii	43.73	1.00e-71	263.00
IUUC-Bol-016382	Brassica oleracea	66.97	2.00e-168	584.00
IUUC-Mtr-058068	Medicago truncatula	66.08	2.00e-159	555.00
IUUC-Obr-076011	Oryza brachyantha	60.40	1.00e-150	525.00
IUUC-Ogl-077192	Oryza glaberrima	54.20	2.00e-76	278.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence