iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005622

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

WD-40 repeat family protein

Genbank Nucleotide ID

GL348720

Gene Name

HOS15; ARALYDRAFT_919976

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_803376.1	scaffold_803376.1	scaffold_803376.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-50	166.7	543	581
UBD/Beta-Prp	1.00e-82	278.4	324	616

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH ++v++laf ++  +++sGs D +i++W++++g+ +k
   Q: 543  GHREPVYSLAFsPNgEYIASGSLDRSIHIWSIKEGKIVK 581
           8***********777*****************9999887 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           ++++ k+v t +++  +++llatgs dg  ++w++   +l+++ls+h++++ ++k++++g++l+tgs Drt+ vwd+++ +  + ++ h+  
   Q: 324  SNEKSKDVTT-LDWNGEGTLLATGSCDGQARIWNLNG-DLISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHSGP 413
           4566677777.************************87.9***************************************************** PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
            l++++   + ++++ s d++i + ++ +    + +++gh+g vncv+++p+g+ll+s+s+D+t ++W++k+++ +++l++ ht+ +y + +
   Q: 414  TLDVDWRN-NVSFATSSTDSMIYLCKIGETRPAK-IFAGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQNTFVHDLRE-HTKEIYTIRW 502
           ******99.8899********************9.*********************************************9.********** PP
   S: 189  dsng.........kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisva 271
           +++g           l+s+s d++vklwd + g+++ ++ngh+++v+s++fspn+e+++sgs D+si iW ++ g+++kt+++  +  i   
   Q: 503  SPTGpgtnnpnkqLTLASASFDSSVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSLDRSIHIWSIKEGKIVKTYTG--NGGIFEV 592
           ***********9999********************************************************************..4455556 PP
   S: 272  vlsfgdnvlvlgsedskvniwklk 295
           +++ ++n+++++ +d++v +++++
   Q: 593  CWNKEGNKIAACFADNSVCVLDFR 616
           679999999999999999999986 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSSLTSVELN FLVFRYLQES GFTHSAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY 60
MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE KKRKERDREK ERDRSKENDK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTAGGAATT GGCTGTGGAG ATGTCTTCAC TTACCTCCGT CGAATTGAAT TTTCTGGTTT 60
TCCGATATCT TCAGGAATCA GGTACGATAG ATAATAGCCT TTCTTCTATG TTCTCGCGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0016575--P:histone deacetylation
GO:0009409--P:response to cold

KEGG

aly:ARALYDRAFT_919976

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000916	Aegilops tauschii	73.24	8.00e-66	241.00
IUUC-Aml-001717	Ailuropoda melanoleuca	58.40	1.00e-121	429.00
IUUC-Atr-002514	Amborella trichopoda	73.80	3.00e-169	587.00
IUUC-Apl-003708	Anas platyrhynchos	58.40	2.00e-121	428.00
IUUC-Aca-004611	Anolis carolinensis	58.13	5.00e-121	427.00
IUUC-Ath-007137	Arabidopsis thaliana	96.09	0.00e+00	775.00
IUUC-Ame-011601	Astyanax mexicanus	58.60	1.00e-124	439.00
IUUC-Bta-013202	Bos taurus	56.10	8.00e-130	456.00
IUUC-Bdi-014315	Brachypodium distachyon	71.84	3.00e-162	564.00
IUUC-Bol-016277	Brassica oleracea	88.42	0.00e+00	746.00
IUUC-Bra-016944	Brassica rapa	88.51	0.00e+00	752.00
IUUC-Cja-018832	Callithrix jacchus	58.40	2.00e-121	428.00
IUUC-Cfa-020029	Canis familiaris	58.40	2.00e-121	429.00
IUUC-Cpo-021682	Cavia porcellus	56.10	1.00e-129	455.00
IUUC-Cre-022979	Chlamydomonas reinhardtii	57.38	3.00e-120	424.00
IUUC-Csa-024075	Chlorocebus sabaeus	58.40	2.00e-121	429.00
IUUC-Cin-025704	Ciona intestinalis	55.09	7.00e-127	446.00
IUUC-Csv-026257	Ciona savignyi	55.88	3.00e-126	444.00
IUUC-Cme-027258	Cyanidioschyzon merolae	41.03	6.00e-92	330.00
IUUC-Dre-027906	Danio rerio	58.33	4.00e-124	437.00
IUUC-Dno-029196	Dasypus novemcinctus	58.40	1.00e-121	429.00
IUUC-Dor-030732	Dipodomys ordii	57.98	2.00e-117	415.00
IUUC-Dme-031939	Drosophila melanogaster	55.17	5.00e-116	411.00
IUUC-Ete-033150	Echinops telfairi	57.40	7.00e-107	380.00
IUUC-Eca-033897	Equus caballus	55.58	5.00e-129	454.00
IUUC-Eeu-034952	Erinaceus europaeus	51.25	5.00e-100	357.00
IUUC-Fca-035734	Felis catus	58.40	1.00e-121	429.00
IUUC-Fal-037185	Ficedula albicollis	58.40	1.00e-121	429.00
IUUC-Gmo-038870	Gadus morhua	58.40	1.00e-127	449.00
IUUC-Gga-041161	Gallus gallus	58.40	9.00e-122	429.00
IUUC-Gac-041844	Gasterosteus aculeatus	58.40	3.00e-130	457.00
IUUC-Gma-043369	Glycine max	77.75	0.00e+00	669.00
IUUC-Ggo-044882	Gorilla gorilla	58.40	2.00e-121	429.00
IUUC-Hsa-046488	Homo sapiens	58.40	2.00e-121	429.00
IUUC-Itr-047958	Ictidomys tridecemlineatus	58.40	1.00e-120	425.00
IUUC-Lch-050672	Latimeria chalumnae	55.19	2.00e-122	431.00
IUUC-Lpe-051084	Leersia perrieri	71.43	7.00e-162	563.00
IUUC-Loc-052030	Lepisosteus oculatus	59.23	3.00e-131	461.00
IUUC-Laf-054280	Loxodonta africana	58.13	3.00e-129	454.00
IUUC-Mcc-055203	Macaca mulatta	58.40	2.00e-121	429.00
IUUC-Meu-056563	Macropus eugenii	62.45	4.00e-84	304.00
IUUC-Mtr-058624	Medicago truncatula	75.06	9.00e-180	622.00
IUUC-Mga-059660	Meleagris gallopavo	58.40	9.00e-122	429.00
IUUC-Mvi-060557	Microbotryum violaceum	37.34	5.00e-72	265.00
IUUC-Mmr-060925	Microcebus murinus	58.40	8.00e-121	426.00
IUUC-Mdo-062078	Monodelphis domestica	58.40	1.00e-121	429.00
IUUC-Mmu-063603	Mus musculus	58.68	3.00e-122	431.00
IUUC-Mac-065508	Musa acuminata	55.83	1.00e-142	499.00
IUUC-Mpu-066741	Mustela putorius furo	58.40	2.00e-121	429.00
IUUC-Mlu-068152	Myotis lucifugus	58.40	2.00e-121	429.00
IUUC-Nle-069229	Nomascus leucogenys	58.40	2.00e-121	429.00
IUUC-Opr-070277	Ochotona princeps	47.90	2.00e-88	318.00
IUUC-Ont-071569	Oreochromis niloticus	59.50	2.00e-131	461.00
IUUC-Oan-073562	Ornithorhynchus anatinus	55.84	1.00e-129	456.00
IUUC-Ocu-074280	Oryctolagus cuniculus	58.40	1.00e-121	429.00
IUUC-Oba-075618	Oryza barthii	53.50	0.00e+00	641.00
IUUC-Obr-076718	Oryza brachyantha	69.21	1.00e-161	561.00
IUUC-Ogl-077302	Oryza glaberrima	55.05	0.00e+00	676.00
IUUC-Ogu-078718	Oryza glumaepatula	54.90	0.00e+00	674.00
IUUC-Oin-079515	Oryza indica	47.03	9.00e-126	443.00
IUUC-Olo-080427	Oryza longistaminata	73.78	1.00e-154	539.00
IUUC-Ome-081696	Oryza meridionalis	54.28	0.00e+00	659.00
IUUC-Oni-082137	Oryza nivara	54.90	0.00e+00	674.00
IUUC-Opu-083505	Oryza punctata	66.26	8.00e-153	533.00
IUUC-Oru-085276	Oryza rufipogon	54.90	0.00e+00	676.00
IUUC-Osa-085791	Oryza sativa	54.90	0.00e+00	674.00
IUUC-Ola-087365	Oryzias latipes	57.85	7.00e-129	453.00
IUUC-Olu-087589	Ostreococcus lucimarinus	59.31	7.00e-136	476.00
IUUC-Oga-088357	Otolemur garnettii	56.47	3.00e-112	398.00
IUUC-Oar-089506	Ovis aries	55.84	2.00e-129	455.00
IUUC-Ptr-091532	Pan troglodytes	58.40	2.00e-121	429.00
IUUC-Pan-091927	Papio anubis	58.40	2.00e-121	429.00
IUUC-Psi-093358	Pelodiscus sinensis	55.84	1.00e-129	455.00
IUUC-Ppa-095868	Physcomitrella patens	69.23	1.00e-153	535.00
IUUC-Pfo-096158	Poecilia formosa	57.85	1.00e-129	456.00
IUUC-Pab-098705	Pongo abelii	58.40	2.00e-121	429.00
IUUC-Pop-098989	Populus trichocarpa	81.48	0.00e+00	636.00
IUUC-Pca-100256	Procavia capensis	57.66	4.00e-118	417.00
IUUC-Ppe-101572	Prunus persica	72.91	7.00e-160	556.00
IUUC-Pva-102616	Pteropus vampyrus	57.98	4.00e-118	417.00
IUUC-Rno-105411	Rattus norvegicus	58.40	1.00e-121	429.00
IUUC-Sce-106132	Saccharomyces cerevisiae	25.06	5.00e-32	131.00
IUUC-Sha-106636	Sarcophilus harrisii	58.40	2.00e-121	429.00
IUUC-Smo-109205	Selaginella moellendorffii	64.16	9.00e-150	522.00
IUUC-Sit-110710	Setaria italica	71.69	8.00e-167	579.00
IUUC-Sly-111336	Solanum lycopersicum	71.43	2.00e-167	581.00
IUUC-Stu-112786	Solanum tuberosum	62.28	2.00e-145	508.00
IUUC-Sar-112971	Sorex araneus	50.56	3.00e-108	385.00
IUUC-Sbi-114420	Sorghum bicolor	71.43	1.00e-166	579.00
IUUC-Sre-115175	Sporisorium reilianum	41.11	1.00e-53	204.00
IUUC-Ssc-115695	Sus scrofa	58.40	2.00e-121	429.00
IUUC-Tgu-116898	Taeniopygia guttata	55.58	2.00e-129	455.00
IUUC-Tru-118254	Takifugu rubripes	59.50	4.00e-131	461.00
IUUC-Tsy-119424	Tarsius syrichta	46.33	3.00e-82	298.00
IUUC-Tni-120861	Tetraodon nigroviridis	59.07	4.00e-129	454.00
IUUC-Tca-121739	Theobroma cacao	75.06	0.00e+00	642.00
IUUC-Tae-125368	Triticum aestivum	70.91	1.00e-162	565.00
IUUC-Tur-126856	Triticum urartu	68.33	2.00e-79	289.00
IUUC-Tme-127126	Tuber melanosporum	32.60	5.00e-44	171.00
IUUC-Tbe-127767	Tupaia belangeri	59.06	1.00e-109	389.00
IUUC-Ttr-128826	Tursiops truncatus	54.94	3.00e-112	398.00
IUUC-Uma-129469	Ustilago maydis	42.69	9.00e-54	204.00
IUUC-Vpa-130768	Vicugna pacos	57.66	4.00e-118	417.00
IUUC-Vvi-131193	Vitis vinifera	75.72	0.00e+00	641.00
IUUC-Xtr-132842	Xenopus tropicalis	56.08	7.00e-115	406.00
IUUC-Xma-134168	Xiphophorus maculatus	58.95	3.00e-130	457.00
IUUC-Yli-134648	Yarrowia lipolytica	27.87	1.00e-36	147.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence