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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007059
Ensembl Protein ID AT5G47010.1
UniProt Accession Q9FJR0; Q8S3K7; RENT1_ARATH
Genbank Protein ID BAB10240.1; AED95457.1; AAL92018.1
Protein Name Regulator of nonsense transcripts 1 homolog; ATP-dependent helicase UPF1
Genbank Nucleotide ID AB013394; CP002688; AF484122
Gene Name UPF1; LBA1; At5g47010; MQD22.15
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G47010 AT5G47010.1 AT5G47010.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
Mentha
Post-translational Modifications (PTMs)
dbPPTdbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/Other 57.27 0.00e+00 937.00 IUUC-Sce-106206
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons (premature termination codon PTC) by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. Eliminates the production of nonsense-containing RNAs (ncRNAs). Required for plant development and adaptation to environmental stresses, including plant defense and response to wounding.
 Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons (premature termination codon PTC) by associating with the nuclear exon junction complex (EJC) and serving as link between the EJC core and NMD machinery. Eliminates the production of nonsense-containing RNAs (ncRNAs). Required for plant development and adaptation to environmental stresses, including plant defense and response to wounding.
Protein Sequence
(Fasta)
MDSQQSDLFD TASQPDTVAD EYTFLEFNTQ GDSEFDYQDF GSPTAWPTPS DSISIADVAD 60
RGEGGAAADH HSEASSPSSL SAGAGNGAKV GRGGVGGSGG VSSSSQVDAL AAGVGNLNFE 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007059|E3,E3 activity/Other|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTCACGCGCC CCTCTTTTCT TCTTCATTGA CACGGACATT CGTTTCCAAT TCTCTCTAAT 60
GTTTCACTAA AGCGCATACA TAACCCTAAC CCTAACTCTC TCGTACTGCA CAAAAAAAAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007059|E3,E3 activity/Other|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0866--Nonsense-mediated mRNA decay
KW-0547--Nucleotide-binding
KW-0597--Phosphoprotein
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0694--RNA-binding
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR006935--Helicase/UvrB_N
IPR014001--Helicase_ATP-bd
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct
PROSITE

PS51192--HELICASE_ATP_BIND_1
Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0000932--C:P-body
GO:0005886--C:plasma membrane
GO:0009506--C:plasmodesma
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0003729--F:mRNA binding
GO:0008270--F:zinc ion binding
GO:0042742--P:defense response to bacterium
GO:0009867--P:jasmonic acid mediated signaling pathway
GO:0048571--P:long-day photoperiodism
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009611--P:response to wounding
GO:0009863--P:salicylic acid mediated signaling pathway
GO:0010182--P:sugar mediated signaling pathway
KEGG ath:AT5G47010
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000680 Aegilops tauschii 79.83 0.00e+00 1687.00
IUUC-Aml-002008 Ailuropoda melanoleuca 71.41 0.00e+00 1258.00
IUUC-Atr-002632 Amborella trichopoda 78.16 0.00e+00 1888.00
IUUC-Apl-003997 Anas platyrhynchos 71.50 0.00e+00 1255.00
IUUC-Aca-004322 Anolis carolinensis 32.54 2.00e-51 197.00
IUUC-Aly-006521 Arabidopsis lyrata 97.77 0.00e+00 2304.00
IUUC-Ago-007801 Ashbya gossypii 57.25 0.00e+00 938.00
IUUC-Acl-008312 Aspergillus clavatus 66.83 0.00e+00 1150.00
IUUC-Afl-008429 Aspergillus flavus 67.28 0.00e+00 1145.00
IUUC-Afu-009092 Aspergillus fumigatus 67.52 0.00e+00 1145.00
IUUC-Ani-009317 Aspergillus nidulans 66.55 0.00e+00 1142.00
IUUC-Ang-009783 Aspergillus niger 67.28 0.00e+00 1145.00
IUUC-Aor-010178 Aspergillus oryzae 67.28 0.00e+00 1145.00
IUUC-Ate-010294 Aspergillus terreus 67.40 0.00e+00 1150.00
IUUC-Ame-010774 Astyanax mexicanus 74.44 9.00e-125 440.00
IUUC-Bgr-012293 Blumeria graminis 64.79 0.00e+00 1134.00
IUUC-Bta-012382 Bos taurus 71.41 0.00e+00 1258.00
IUUC-Bci-013937 Botrytis cinerea 65.56 0.00e+00 1124.00
IUUC-Bdi-014612 Brachypodium distachyon 80.45 0.00e+00 1775.00
IUUC-Bol-015145 Brassica oleracea 90.78 0.00e+00 2094.00
IUUC-Bra-017370 Brassica rapa 89.97 0.00e+00 2061.00
IUUC-Cel-018240 Caenorhabditis elegans 57.40 0.00e+00 949.00
IUUC-Cja-019892 Callithrix jacchus 72.38 0.00e+00 1265.00
IUUC-Cfa-020700 Canis familiaris 71.41 0.00e+00 1258.00
IUUC-Cpo-021510 Cavia porcellus 71.53 0.00e+00 1258.00
IUUC-Cre-022731 Chlamydomonas reinhardtii 64.88 0.00e+00 1062.00
IUUC-Csa-023665 Chlorocebus sabaeus 72.38 0.00e+00 1268.00
IUUC-Cin-025798 Ciona intestinalis 69.44 0.00e+00 1142.00
IUUC-Csv-025901 Ciona savignyi 66.71 0.00e+00 1160.00
IUUC-Cgl-026653 Colletotrichum gloeosporioides 64.33 0.00e+00 1097.00
IUUC-Cne-027014 Cryptococcus neoformans 66.59 0.00e+00 1188.00
IUUC-Dre-028705 Danio rerio 72.41 0.00e+00 1261.00
IUUC-Dor-030369 Dipodomys ordii 70.04 0.00e+00 1216.00
IUUC-Dme-031767 Drosophila melanogaster 64.73 0.00e+00 1149.00
IUUC-Ete-032800 Echinops telfairi 33.85 5.00e-54 205.00
IUUC-Eca-033840 Equus caballus 72.38 0.00e+00 1265.00
IUUC-Eeu-035137 Erinaceus europaeus 42.86 5.20e-01 28.10
IUUC-Fca-035466 Felis catus 71.32 0.00e+00 1256.00
IUUC-Fal-037548 Ficedula albicollis 72.02 0.00e+00 1254.00
IUUC-Fox-038023 Fusarium oxysporum 63.10 0.00e+00 1094.00
IUUC-Gmo-039285 Gadus morhua 70.60 0.00e+00 1243.00
IUUC-Ggr-039810 Gaeumannomyces graminis 62.02 0.00e+00 1126.00
IUUC-Gga-040972 Gallus gallus 72.38 0.00e+00 1266.00
IUUC-Gac-042075 Gasterosteus aculeatus 62.36 0.00e+00 1253.00
IUUC-Gma-042713 Glycine max 80.70 0.00e+00 1980.00
IUUC-Ggo-045398 Gorilla gorilla 72.38 0.00e+00 1265.00
IUUC-Hsa-046152 Homo sapiens 72.38 0.00e+00 1268.00
IUUC-Hvu-047555 Hordeum vulgare 92.50 0.00e+00 895.00
IUUC-Itr-048247 Ictidomys tridecemlineatus 71.71 0.00e+00 1246.00
IUUC-Kpa-049205 Komagataella pastoris 50.25 0.00e+00 758.00
IUUC-Lch-049587 Latimeria chalumnae 73.25 0.00e+00 787.00
IUUC-Lpe-051059 Leersia perrieri 80.77 0.00e+00 1774.00
IUUC-Loc-051911 Lepisosteus oculatus 72.38 0.00e+00 1265.00
IUUC-Lma-053007 Leptosphaeria maculans 66.83 0.00e+00 1129.00
IUUC-Laf-054234 Loxodonta africana 71.41 0.00e+00 1258.00
IUUC-Mcc-054762 Macaca mulatta 71.41 0.00e+00 1258.00
IUUC-Meu-056677 Macropus eugenii 70.29 4.00e-132 465.00
IUUC-Mor-057147 Magnaporthe oryzae 65.44 0.00e+00 1125.00
IUUC-Mpo-057314 Magnaporthe poae 61.90 0.00e+00 1127.00
IUUC-Mtr-058329 Medicago truncatula 81.90 0.00e+00 2025.00
IUUC-Mla-059094 Melampsora laricipopulina 62.28 0.00e+00 633.00
IUUC-Mga-060126 Meleagris gallopavo 70.92 0.00e+00 1238.00
IUUC-Mvi-060373 Microbotryum violaceum 67.26 0.00e+00 1228.00
IUUC-Mmr-060628 Microcebus murinus 71.41 0.00e+00 1259.00
IUUC-Mdo-061858 Monodelphis domestica 72.38 0.00e+00 1264.00
IUUC-Mmu-064116 Mus musculus 72.26 0.00e+00 1268.00
IUUC-Mac-065136 Musa acuminata 81.33 0.00e+00 1834.00
IUUC-Mpu-066463 Mustela putorius furo 72.38 0.00e+00 1268.00
IUUC-Mlu-068098 Myotis lucifugus 72.38 0.00e+00 1268.00
IUUC-Nfi-068370 Neosartorya fischeri 67.52 0.00e+00 1145.00
IUUC-Ncr-068792 Neurospora crassa 64.86 0.00e+00 1107.00
IUUC-Nle-070102 Nomascus leucogenys 72.38 0.00e+00 1260.00
IUUC-Opr-070620 Ochotona princeps 69.05 0.00e+00 1169.00
IUUC-Ont-072685 Oreochromis niloticus 71.80 0.00e+00 1256.00
IUUC-Oan-073665 Ornithorhynchus anatinus 70.46 0.00e+00 1262.00
IUUC-Ocu-074154 Oryctolagus cuniculus 33.33 3.00e-55 210.00
IUUC-Oba-075075 Oryza barthii 78.24 0.00e+00 1509.00
IUUC-Obr-076183 Oryza brachyantha 81.31 0.00e+00 1605.00
IUUC-Ogl-077691 Oryza glaberrima 82.35 0.00e+00 1811.00
IUUC-Ogu-078423 Oryza glumaepatula 81.97 0.00e+00 1790.00
IUUC-Oin-080107 Oryza indica 82.36 0.00e+00 1812.00
IUUC-Olo-080269 Oryza longistaminata 81.95 0.00e+00 1720.00
IUUC-Ome-081779 Oryza meridionalis 82.06 0.00e+00 1788.00
IUUC-Oni-082366 Oryza nivara 82.36 0.00e+00 1813.00
IUUC-Opu-083958 Oryza punctata 79.35 0.00e+00 1779.00
IUUC-Oru-084182 Oryza rufipogon 82.36 0.00e+00 1813.00
IUUC-Osa-085285 Oryza sativa 82.47 0.00e+00 1818.00
IUUC-Ola-086954 Oryzias latipes 68.20 0.00e+00 1216.00
IUUC-Olu-087685 Ostreococcus lucimarinus 61.12 0.00e+00 999.00
IUUC-Oga-088591 Otolemur garnettii 72.38 0.00e+00 1267.00
IUUC-Oar-089417 Ovis aries 71.29 0.00e+00 1255.00
IUUC-Ptr-091510 Pan troglodytes 71.64 0.00e+00 1247.00
IUUC-Pan-091886 Papio anubis 72.38 0.00e+00 1268.00
IUUC-Psi-093755 Pelodiscus sinensis 70.23 0.00e+00 849.00
IUUC-Pma-094470 Petromyzon marinus 71.10 0.00e+00 1264.00
IUUC-Pno-094963 Phaeosphaeria nodorum 66.79 0.00e+00 1125.00
IUUC-Ppa-095479 Physcomitrella patens 76.04 0.00e+00 1701.00
IUUC-Pfo-097456 Poecilia formosa 71.76 0.00e+00 1259.00
IUUC-Pab-098075 Pongo abelii 67.76 0.00e+00 1158.00
IUUC-Pop-099557 Populus trichocarpa 80.59 0.00e+00 1997.00
IUUC-Pca-100717 Procavia capensis 75.25 5.00e-137 481.00
IUUC-Ppe-101675 Prunus persica 81.20 0.00e+00 2033.00
IUUC-Pva-103029 Pteropus vampyrus 72.73 0.00e+00 960.00
IUUC-Pgr-103318 Puccinia graminis 66.95 0.00e+00 1144.00
IUUC-Ptt-103956 Puccinia triticina 67.07 0.00e+00 1144.00
IUUC-Pte-104399 Pyrenophora teres 67.28 0.00e+00 1131.00
IUUC-Pyt-104749 Pyrenophora triticirepentis 67.28 0.00e+00 1130.00
IUUC-Rno-105784 Rattus norvegicus 72.26 0.00e+00 1267.00
IUUC-Sce-106206 Saccharomyces cerevisiae 57.27 0.00e+00 925.00
IUUC-Sha-106566 Sarcophilus harrisii 71.36 0.00e+00 1253.00
IUUC-Sja-107721 Schizosaccharomyces japonicus 62.39 0.00e+00 1058.00
IUUC-Spo-108258 Schizosaccharomyces pombe 58.69 0.00e+00 1013.00
IUUC-Ssl-108640 Sclerotinia sclerotiorum 62.13 0.00e+00 981.00
IUUC-Sit-109760 Setaria italica 81.56 0.00e+00 1808.00
IUUC-Sly-111807 Solanum lycopersicum 79.74 0.00e+00 1966.00
IUUC-Stu-112869 Solanum tuberosum 79.97 0.00e+00 1780.00
IUUC-Sar-112950 Sorex araneus 32.37 3.00e-41 162.00
IUUC-Sbi-114863 Sorghum bicolor 81.45 0.00e+00 1788.00
IUUC-Sre-115092 Sporisorium reilianum 70.05 0.00e+00 1194.00
IUUC-Tgu-117214 Taeniopygia guttata 65.98 0.00e+00 1121.00
IUUC-Tru-118386 Takifugu rubripes 70.19 0.00e+00 1234.00
IUUC-Tsy-119550 Tarsius syrichta 66.32 9.00e-112 397.00
IUUC-Tni-120212 Tetraodon nigroviridis 70.60 0.00e+00 1207.00
IUUC-Tca-121353 Theobroma cacao 80.61 0.00e+00 1977.00
IUUC-Tre-122245 Trichoderma reesei 32.80 2.00e-50 194.00
IUUC-Tvi-122452 Trichoderma virens 63.67 0.00e+00 1086.00
IUUC-Tae-123692 Triticum aestivum 81.30 0.00e+00 1793.00
IUUC-Tur-126770 Triticum urartu 70.91 0.00e+00 1585.00
IUUC-Tme-126956 Tuber melanosporum 68.53 0.00e+00 1181.00
IUUC-Tbe-127873 Tupaia belangeri 31.78 3.00e-47 182.00
IUUC-Ttr-128212 Tursiops truncatus 67.69 0.00e+00 1152.00
IUUC-Uma-129327 Ustilago maydis 67.40 0.00e+00 1199.00
IUUC-Vda-129858 Verticillium dahliae 63.46 0.00e+00 1072.00
IUUC-Vpa-130743 Vicugna pacos 32.24 2.00e-49 190.00
IUUC-Vvi-131222 Vitis vinifera 81.27 0.00e+00 1977.00
IUUC-Xtr-131800 Xenopus tropicalis 65.01 0.00e+00 1003.00
IUUC-Xma-133216 Xiphophorus maculatus 71.76 0.00e+00 1260.00
IUUC-Yli-134482 Yarrowia lipolytica 53.50 0.00e+00 881.00
IUUC-Zma-134802 Zea mays 80.79 0.00e+00 1820.00
Created Date 25-Jun-2017

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