iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oru-084453

Ensembl Protein ID

ORUFI07G12390.1

UniProt Accession

A0A0E0Q7F0; A0A0E0Q7F0_ORYRU

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORUFI07G12390	ORUFI07G12390.1	ORUFI07G12390.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.50e-12	46.9	343	381

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+++v +l+   ++  ++sGs Dgti+vW++ tg+++k
   Q: 343  GHNGPVKSLSVeaTGQWIASGSSDGTIRVWEVETGRCIK 381
           8*********9976699********************87 PP

Organism

Oryza rufipogon

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGHSDGDHGS DLSADDSPWS EGSWSDDDDE GSLSFEDSGE GSDAESDEPD APAVEESDSS 60
EDEVAPRNTI GDVPLEWYKN EEHIGYDITG SKIKKRDREG RIEAYLRNAD DAKNWRKIYD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGGCACA GCGACGGCGA CCACGGTAGC GACCTCTCCG CCGACGATTC CCCGTGGAGC 60
GAGGGGAGCT GGTCCGACGA CGATGACGAG GTGCGGCTCT CCTCTTCGAA GGATTTCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	84.45	0.00e+00	961.00
IUUC-Aml-001507	Ailuropoda melanoleuca	40.29	2.00e-123	436.00
IUUC-Atr-003141	Amborella trichopoda	65.09	2.00e-152	532.00
IUUC-Apl-003545	Anas platyrhynchos	41.29	6.00e-118	417.00
IUUC-Aly-005649	Arabidopsis lyrata	62.03	0.00e+00	794.00
IUUC-Ath-007625	Arabidopsis thaliana	60.24	0.00e+00	772.00
IUUC-Ago-007958	Ashbya gossypii	37.91	4.00e-127	448.00
IUUC-Acl-008344	Aspergillus clavatus	40.06	3.00e-113	402.00
IUUC-Afl-008616	Aspergillus flavus	38.52	2.00e-113	402.00
IUUC-Afu-009083	Aspergillus fumigatus	43.87	1.00e-62	234.00
IUUC-Ani-009365	Aspergillus nidulans	38.77	3.00e-114	405.00
IUUC-Ang-009796	Aspergillus niger	38.54	2.00e-109	389.00
IUUC-Aor-010015	Aspergillus oryzae	38.52	2.00e-113	402.00
IUUC-Ate-010537	Aspergillus terreus	37.50	1.00e-116	413.00
IUUC-Ame-011767	Astyanax mexicanus	52.94	5.00e-59	220.00
IUUC-Bgr-012286	Blumeria graminis	39.23	8.00e-127	447.00
IUUC-Bta-013569	Bos taurus	42.67	5.00e-138	484.00
IUUC-Bci-013820	Botrytis cinerea	39.76	1.00e-118	420.00
IUUC-Bdi-014895	Brachypodium distachyon	79.91	0.00e+00	1055.00
IUUC-Bol-016099	Brassica oleracea	63.74	0.00e+00	823.00
IUUC-Bra-017174	Brassica rapa	63.80	0.00e+00	832.00
IUUC-Cel-018201	Caenorhabditis elegans	38.90	9.00e-117	413.00
IUUC-Cja-019009	Callithrix jacchus	39.47	4.00e-127	447.00
IUUC-Cfa-020173	Canis familiaris	40.41	3.00e-129	455.00
IUUC-Cpo-021796	Cavia porcellus	43.32	4.00e-137	481.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	47.48	6.00e-159	553.00
IUUC-Csa-023440	Chlorocebus sabaeus	42.49	2.00e-141	496.00
IUUC-Cin-025782	Ciona intestinalis	42.24	3.00e-140	492.00
IUUC-Csv-026352	Ciona savignyi	43.11	3.00e-145	508.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	37.17	1.00e-104	373.00
IUUC-Cne-027004	Cryptococcus neoformans	41.53	5.00e-142	498.00
IUUC-Cme-027242	Cyanidioschyzon merolae	33.43	9.00e-99	353.00
IUUC-Dre-028658	Danio rerio	43.38	2.00e-149	522.00
IUUC-Dno-028883	Dasypus novemcinctus	43.53	3.00e-141	494.00
IUUC-Dor-031031	Dipodomys ordii	41.69	8.00e-140	490.00
IUUC-Dse-031443	Dothistroma septosporum	39.30	4.00e-65	242.00
IUUC-Dme-031786	Drosophila melanogaster	40.90	1.00e-139	489.00
IUUC-Eca-033677	Equus caballus	43.20	5.00e-138	484.00
IUUC-Eeu-035310	Erinaceus europaeus	38.20	1.00e-100	359.00
IUUC-Fca-035888	Felis catus	40.87	2.00e-131	462.00
IUUC-Fal-037438	Ficedula albicollis	44.65	2.00e-123	435.00
IUUC-Fox-037973	Fusarium oxysporum	40.15	3.00e-131	462.00
IUUC-Fso-038187	Fusarium solani	39.26	5.00e-129	454.00
IUUC-Gmo-039114	Gadus morhua	39.80	1.00e-128	453.00
IUUC-Ggr-039746	Gaeumannomyces graminis	38.77	2.00e-133	469.00
IUUC-Gga-040631	Gallus gallus	45.70	3.00e-82	298.00
IUUC-Gac-042582	Gasterosteus aculeatus	41.64	2.00e-133	469.00
IUUC-Gma-044215	Glycine max	60.74	0.00e+00	796.00
IUUC-Ggo-045587	Gorilla gorilla	42.56	2.00e-141	495.00
IUUC-Hsa-046319	Homo sapiens	42.56	2.00e-141	495.00
IUUC-Hvu-047526	Hordeum vulgare	78.38	0.00e+00	1018.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	43.32	6.00e-139	487.00
IUUC-Kpa-049221	Komagataella pastoris	37.44	1.00e-120	427.00
IUUC-Lch-049640	Latimeria chalumnae	43.29	1.00e-152	533.00
IUUC-Lpe-051135	Leersia perrieri	96.22	0.00e+00	1093.00
IUUC-Loc-051930	Lepisosteus oculatus	44.30	7.00e-151	526.00
IUUC-Lma-053290	Leptosphaeria maculans	39.94	1.00e-116	413.00
IUUC-Laf-053903	Loxodonta africana	43.82	6.00e-82	298.00
IUUC-Mcc-055471	Macaca mulatta	42.56	2.00e-142	499.00
IUUC-Meu-056190	Macropus eugenii	43.04	2.00e-138	485.00
IUUC-Mor-057135	Magnaporthe oryzae	38.65	2.00e-125	442.00
IUUC-Mpo-057475	Magnaporthe poae	37.73	2.00e-123	436.00
IUUC-Mtr-058689	Medicago truncatula	63.50	9.00e-145	506.00
IUUC-Mla-059149	Melampsora laricipopulina	41.24	2.00e-133	469.00
IUUC-Mga-059645	Meleagris gallopavo	39.75	8.00e-45	172.00
IUUC-Mvi-060485	Microbotryum violaceum	39.48	2.00e-122	433.00
IUUC-Mmr-061674	Microcebus murinus	42.67	7.00e-137	480.00
IUUC-Mdo-062973	Monodelphis domestica	41.45	3.00e-142	498.00
IUUC-Mmu-064180	Mus musculus	41.15	9.00e-140	490.00
IUUC-Mac-064535	Musa acuminata	66.89	5.00e-180	624.00
IUUC-Mpu-066406	Mustela putorius furo	42.88	6.00e-142	497.00
IUUC-Mlu-067795	Myotis lucifugus	42.67	5.00e-130	457.00
IUUC-Nfi-068516	Neosartorya fischeri	40.10	9.00e-57	214.00
IUUC-Ncr-068767	Neurospora crassa	39.54	9.00e-119	420.00
IUUC-Opr-071084	Ochotona princeps	45.58	1.00e-63	236.00
IUUC-Ont-071614	Oreochromis niloticus	41.32	1.00e-143	503.00
IUUC-Oba-075980	Oryza barthii	99.38	0.00e+00	1163.00
IUUC-Obr-076799	Oryza brachyantha	91.45	0.00e+00	1174.00
IUUC-Ogl-077134	Oryza glaberrima	94.40	0.00e+00	1166.00
IUUC-Ogu-078655	Oryza glumaepatula	96.79	0.00e+00	1157.00
IUUC-Oin-079654	Oryza indica	94.40	0.00e+00	1135.00
IUUC-Olo-080706	Oryza longistaminata	100.00	0.00e+00	1172.00
IUUC-Ome-081716	Oryza meridionalis	93.02	0.00e+00	1082.00
IUUC-Oni-082508	Oryza nivara	91.80	0.00e+00	1112.00
IUUC-Opu-083707	Oryza punctata	98.77	0.00e+00	1145.00
IUUC-Osa-085811	Oryza sativa	94.40	0.00e+00	1166.00
IUUC-Ola-087361	Oryzias latipes	43.42	3.00e-147	515.00
IUUC-Oga-088015	Otolemur garnettii	42.60	9.00e-143	500.00
IUUC-Oar-090058	Ovis aries	40.90	9.00e-74	270.00
IUUC-Ptr-090631	Pan troglodytes	42.35	9.00e-55	206.00
IUUC-Pan-092306	Papio anubis	42.49	4.00e-141	494.00
IUUC-Pma-094622	Petromyzon marinus	43.25	1.00e-147	516.00
IUUC-Pno-094794	Phaeosphaeria nodorum	36.38	4.00e-105	375.00
IUUC-Ppa-095528	Physcomitrella patens	54.75	6.00e-145	507.00
IUUC-Pfo-096682	Poecilia formosa	42.09	1.00e-145	509.00
IUUC-Pab-097939	Pongo abelii	42.55	1.00e-128	452.00
IUUC-Pop-099043	Populus trichocarpa	66.79	0.00e+00	760.00
IUUC-Pca-100333	Procavia capensis	42.67	5.00e-138	484.00
IUUC-Ppe-102078	Prunus persica	60.68	0.00e+00	764.00
IUUC-Pgr-103525	Puccinia graminis	42.17	2.00e-126	446.00
IUUC-Ptt-103929	Puccinia triticina	41.07	8.00e-121	427.00
IUUC-Pte-104029	Pyrenophora teres	39.38	5.00e-126	444.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	39.23	2.00e-125	442.00
IUUC-Rno-105248	Rattus norvegicus	43.16	1.00e-138	486.00
IUUC-Sce-106381	Saccharomyces cerevisiae	37.34	3.00e-125	442.00
IUUC-Sha-106519	Sarcophilus harrisii	44.26	2.00e-145	508.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	39.30	6.00e-119	421.00
IUUC-Spo-108071	Schizosaccharomyces pombe	38.20	1.00e-116	413.00
IUUC-Smo-108881	Selaginella moellendorffii	58.48	0.00e+00	696.00
IUUC-Sit-109742	Setaria italica	83.55	0.00e+00	1090.00
IUUC-Sly-110970	Solanum lycopersicum	73.18	4.00e-150	523.00
IUUC-Stu-112593	Solanum tuberosum	64.15	0.00e+00	839.00
IUUC-Sar-113123	Sorex araneus	36.99	4.00e-53	200.00
IUUC-Sbi-113945	Sorghum bicolor	83.11	0.00e+00	1056.00
IUUC-Sre-115188	Sporisorium reilianum	42.82	5.00e-77	282.00
IUUC-Ssc-115352	Sus scrofa	42.67	5.00e-142	497.00
IUUC-Tru-117685	Takifugu rubripes	42.63	5.00e-146	511.00
IUUC-Tni-119982	Tetraodon nigroviridis	41.57	7.00e-140	490.00
IUUC-Tca-121664	Theobroma cacao	66.24	0.00e+00	848.00
IUUC-Tre-122229	Trichoderma reesei	39.88	2.00e-115	409.00
IUUC-Tvi-122576	Trichoderma virens	40.74	2.00e-118	419.00
IUUC-Tae-124110	Triticum aestivum	81.30	0.00e+00	966.00
IUUC-Tur-126781	Triticum urartu	84.81	0.00e+00	948.00
IUUC-Tme-127080	Tuber melanosporum	41.80	5.00e-140	491.00
IUUC-Ttr-128514	Tursiops truncatus	44.57	2.00e-86	313.00
IUUC-Uma-129556	Ustilago maydis	43.39	5.00e-75	275.00
IUUC-Vda-129715	Verticillium dahliae	40.56	2.00e-125	442.00
IUUC-Vvi-131211	Vitis vinifera	64.68	0.00e+00	821.00
IUUC-Xma-133883	Xiphophorus maculatus	41.63	9.00e-140	490.00
IUUC-Yli-134438	Yarrowia lipolytica	38.92	2.00e-120	426.00
IUUC-Zma-135341	Zea mays	83.80	0.00e+00	720.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence