iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115462

Ensembl Protein ID

ENSSSCP00000012836.2

UniProt Accession

F1SGX1; F1SGX1_PIG

Genbank Protein ID

ENSSSCP00000012836

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU638724

Gene Name

CHAF1B

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000012056.2	ENSSSCT00000013188.2	ENSSSCP00000012836.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.60e-19	68.4	127	162

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH ++v+++++  d + ++s+s D+t  +WD+++g 
   Q: 127  GHLEDVYDICWaADgNVMASASVDNTAIIWDVSKGQ 162
           89**********6669***************99886 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MKVITCEIAW HNKEPVYSLD FQHGTAGRIH RLASAGVDTT VRIWKVEKGP DGKAIVEFLS 60
NLARHTKAVN VVRFSPNGEI LASGGDDAVI LLWKVNDNKE PEQIAFQDED EAQLNKENWT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGTACCAACG ATTTTCAGCT TTCCTCCGTC TTTGGAGAAA GAACGGTTCC CGAGGAATTT 60
TATTTTGCCC CTGCAAGACT CAGGAGGATG AAAGTCATCA CTTGCGAAAT CGCCTGGCAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR029129--CAF1_p60_C
IPR001632--Gprotein_B
IPR002469--Peptidase_S9B_N
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF15512--CAF-1_p60_C
PF00400--WD40

PRINTS

PR00319--GPROTEINB

SMART

SM00320--WD40

Gene Ontology

GO:0033186--C:CAF-1 complex
GO:0005829--C:cytosol
GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0042393--F:histone binding
GO:0006335--P:DNA replication-dependent nucleosome assembly
GO:0006334--P:nucleosome assembly

KEGG

ssc:100513568

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000474	Aegilops tauschii	40.10	2.00e-81	296.00
IUUC-Aml-001755	Ailuropoda melanoleuca	83.83	0.00e+00	935.00
IUUC-Atr-002674	Amborella trichopoda	40.25	2.00e-85	309.00
IUUC-Apl-003701	Anas platyrhynchos	72.78	0.00e+00	797.00
IUUC-Aca-004692	Anolis carolinensis	74.03	0.00e+00	789.00
IUUC-Aly-006286	Arabidopsis lyrata	40.00	3.00e-86	311.00
IUUC-Ath-007683	Arabidopsis thaliana	39.50	3.00e-86	311.00
IUUC-Ago-007940	Ashbya gossypii	33.63	5.00e-64	238.00
IUUC-Acl-008070	Aspergillus clavatus	43.72	1.00e-43	171.00
IUUC-Afl-008414	Aspergillus flavus	42.06	4.00e-43	169.00
IUUC-Ani-009399	Aspergillus nidulans	44.19	2.00e-43	170.00
IUUC-Ang-009650	Aspergillus niger	40.45	2.00e-41	163.00
IUUC-Aor-009937	Aspergillus oryzae	42.06	4.00e-43	169.00
IUUC-Ate-010505	Aspergillus terreus	37.21	6.00e-28	118.00
IUUC-Ame-011094	Astyanax mexicanus	64.53	0.00e+00	659.00
IUUC-Bgr-012005	Blumeria graminis	39.72	2.00e-38	154.00
IUUC-Bta-013423	Bos taurus	87.46	0.00e+00	936.00
IUUC-Bci-013847	Botrytis cinerea	39.81	2.00e-39	157.00
IUUC-Bdi-014860	Brachypodium distachyon	42.11	1.00e-81	296.00
IUUC-Bol-016603	Brassica oleracea	38.78	1.00e-82	300.00
IUUC-Bra-017175	Brassica rapa	40.15	3.00e-79	288.00
IUUC-Cel-018272	Caenorhabditis elegans	34.32	9.00e-57	214.00
IUUC-Cja-019558	Callithrix jacchus	86.55	0.00e+00	940.00
IUUC-Cfa-020900	Canis familiaris	83.19	0.00e+00	912.00
IUUC-Cpo-022054	Cavia porcellus	77.94	0.00e+00	811.00
IUUC-Csa-023850	Chlorocebus sabaeus	88.06	0.00e+00	955.00
IUUC-Cho-024510	Choloepus hoffmanni	85.12	2.00e-145	508.00
IUUC-Cin-025178	Ciona intestinalis	48.10	1.00e-109	390.00
IUUC-Cgl-026572	Colletotrichum gloeosporioides	43.35	2.00e-36	147.00
IUUC-Cne-027015	Cryptococcus neoformans	32.03	5.00e-37	149.00
IUUC-Cme-027136	Cyanidioschyzon merolae	32.00	4.00e-59	222.00
IUUC-Dre-027879	Danio rerio	64.39	0.00e+00	655.00
IUUC-Dno-029335	Dasypus novemcinctus	85.01	0.00e+00	953.00
IUUC-Dor-030520	Dipodomys ordii	69.34	0.00e+00	716.00
IUUC-Dse-031566	Dothistroma septosporum	41.31	1.00e-42	168.00
IUUC-Dme-031838	Drosophila melanogaster	48.47	1.00e-109	390.00
IUUC-Eca-033563	Equus caballus	90.02	0.00e+00	1020.00
IUUC-Fca-036052	Felis catus	83.04	0.00e+00	913.00
IUUC-Fal-037080	Ficedula albicollis	71.38	0.00e+00	792.00
IUUC-Fox-038022	Fusarium oxysporum	41.78	7.00e-41	162.00
IUUC-Fso-038115	Fusarium solani	42.25	7.00e-40	158.00
IUUC-Gmo-039461	Gadus morhua	72.76	7.00e-138	482.00
IUUC-Ggr-040100	Gaeumannomyces graminis	40.76	4.00e-41	162.00
IUUC-Gga-041133	Gallus gallus	72.79	0.00e+00	799.00
IUUC-Gac-041769	Gasterosteus aculeatus	64.23	0.00e+00	664.00
IUUC-Gma-043339	Glycine max	41.35	2.00e-92	332.00
IUUC-Ggo-044561	Gorilla gorilla	87.57	0.00e+00	949.00
IUUC-Hsa-046150	Homo sapiens	87.88	0.00e+00	957.00
IUUC-Hvu-047792	Hordeum vulgare	38.97	2.00e-51	195.00
IUUC-Itr-048630	Ictidomys tridecemlineatus	87.57	0.00e+00	899.00
IUUC-Kpa-049397	Komagataella pastoris	39.24	6.00e-83	300.00
IUUC-Lch-050365	Latimeria chalumnae	53.15	2.00e-142	498.00
IUUC-Lpe-050875	Leersia perrieri	40.60	5.00e-82	298.00
IUUC-Loc-052770	Lepisosteus oculatus	68.26	0.00e+00	686.00
IUUC-Lma-053291	Leptosphaeria maculans	39.44	2.00e-41	164.00
IUUC-Laf-053505	Loxodonta africana	85.54	0.00e+00	971.00
IUUC-Mcc-054803	Macaca mulatta	87.88	0.00e+00	954.00
IUUC-Meu-056578	Macropus eugenii	69.40	0.00e+00	746.00
IUUC-Mor-057211	Magnaporthe oryzae	40.09	2.00e-39	157.00
IUUC-Mpo-057411	Magnaporthe poae	40.28	3.00e-40	160.00
IUUC-Mtr-058066	Medicago truncatula	42.61	9.00e-92	330.00
IUUC-Mga-059735	Meleagris gallopavo	72.98	0.00e+00	809.00
IUUC-Mmr-061343	Microcebus murinus	86.79	0.00e+00	984.00
IUUC-Mdo-062065	Monodelphis domestica	78.92	0.00e+00	864.00
IUUC-Mmu-063501	Mus musculus	82.67	0.00e+00	875.00
IUUC-Mac-064864	Musa acuminata	39.60	3.00e-83	301.00
IUUC-Mpu-066549	Mustela putorius furo	83.01	0.00e+00	904.00
IUUC-Mlu-067121	Myotis lucifugus	78.55	0.00e+00	842.00
IUUC-Nfi-068462	Neosartorya fischeri	44.19	4.00e-44	172.00
IUUC-Ncr-068838	Neurospora crassa	38.79	2.00e-40	160.00
IUUC-Nle-069854	Nomascus leucogenys	88.06	0.00e+00	945.00
IUUC-Opr-070803	Ochotona princeps	77.14	0.00e+00	825.00
IUUC-Ont-071642	Oreochromis niloticus	65.13	0.00e+00	668.00
IUUC-Oan-073675	Ornithorhynchus anatinus	75.32	0.00e+00	827.00
IUUC-Ocu-073863	Oryctolagus cuniculus	93.23	0.00e+00	756.00
IUUC-Oba-075682	Oryza barthii	40.10	1.00e-77	283.00
IUUC-Obr-076039	Oryza brachyantha	41.85	2.00e-83	302.00
IUUC-Ogu-078021	Oryza glumaepatula	41.10	2.00e-82	299.00
IUUC-Oin-079908	Oryza indica	35.28	9.00e-63	234.00
IUUC-Olo-081063	Oryza longistaminata	41.10	2.00e-82	299.00
IUUC-Ome-081930	Oryza meridionalis	41.10	2.00e-82	299.00
IUUC-Oni-082547	Oryza nivara	41.10	3.00e-82	298.00
IUUC-Opu-084089	Oryza punctata	40.60	9.00e-80	291.00
IUUC-Oru-084844	Oryza rufipogon	41.10	3.00e-82	298.00
IUUC-Osa-085582	Oryza sativa	41.10	3.00e-82	298.00
IUUC-Ola-087187	Oryzias latipes	61.24	0.00e+00	676.00
IUUC-Olu-087792	Ostreococcus lucimarinus	39.36	2.00e-76	279.00
IUUC-Oga-088390	Otolemur garnettii	83.93	0.00e+00	956.00
IUUC-Oar-089740	Ovis aries	84.28	0.00e+00	906.00
IUUC-Ptr-091581	Pan troglodytes	88.06	0.00e+00	956.00
IUUC-Pan-092258	Papio anubis	80.49	0.00e+00	860.00
IUUC-Psi-093761	Pelodiscus sinensis	75.09	0.00e+00	839.00
IUUC-Ppa-095428	Physcomitrella patens	41.85	1.00e-92	333.00
IUUC-Pfo-097357	Poecilia formosa	66.40	0.00e+00	667.00
IUUC-Pab-098520	Pongo abelii	87.88	0.00e+00	952.00
IUUC-Pop-099331	Populus trichocarpa	39.86	1.00e-85	310.00
IUUC-Ppe-101548	Prunus persica	40.24	5.00e-86	311.00
IUUC-Pva-103243	Pteropus vampyrus	87.12	0.00e+00	865.00
IUUC-Pgr-103591	Puccinia graminis	33.71	5.00e-36	145.00
IUUC-Pte-104247	Pyrenophora teres	40.38	2.00e-41	164.00
IUUC-Pyt-104641	Pyrenophora triticirepentis	40.38	2.00e-41	163.00
IUUC-Rno-105202	Rattus norvegicus	83.24	0.00e+00	887.00
IUUC-Sce-106250	Saccharomyces cerevisiae	35.57	6.00e-72	264.00
IUUC-Sha-107036	Sarcophilus harrisii	80.18	0.00e+00	889.00
IUUC-Sja-107912	Schizosaccharomyces japonicus	37.05	1.00e-75	276.00
IUUC-Spo-108050	Schizosaccharomyces pombe	32.99	1.00e-71	263.00
IUUC-Ssl-108607	Sclerotinia sclerotiorum	37.86	5.00e-40	159.00
IUUC-Sit-109838	Setaria italica	42.43	4.00e-84	305.00
IUUC-Sly-110872	Solanum lycopersicum	39.80	2.00e-84	306.00
IUUC-Stu-111933	Solanum tuberosum	39.55	2.00e-81	295.00
IUUC-Sbi-114587	Sorghum bicolor	40.90	1.00e-84	306.00
IUUC-Tgu-117186	Taeniopygia guttata	69.88	0.00e+00	769.00
IUUC-Tru-118310	Takifugu rubripes	64.80	0.00e+00	667.00
IUUC-Tsy-118927	Tarsius syrichta	79.96	0.00e+00	701.00
IUUC-Tni-120832	Tetraodon nigroviridis	72.29	0.00e+00	645.00
IUUC-Tca-121584	Theobroma cacao	43.00	4.00e-87	315.00
IUUC-Tre-122140	Trichoderma reesei	40.65	4.00e-40	159.00
IUUC-Tvi-122663	Trichoderma virens	42.06	1.00e-40	160.00
IUUC-Tae-124502	Triticum aestivum	40.10	4.00e-81	295.00
IUUC-Tur-126239	Triticum urartu	40.10	1.00e-81	296.00
IUUC-Tme-127108	Tuber melanosporum	40.71	2.00e-80	293.00
IUUC-Ttr-129010	Tursiops truncatus	90.55	0.00e+00	976.00
IUUC-Vda-129825	Verticillium dahliae	42.92	7.00e-42	165.00
IUUC-Vpa-130374	Vicugna pacos	81.90	6.00e-103	367.00
IUUC-Vvi-131136	Vitis vinifera	39.85	2.00e-83	302.00
IUUC-Xtr-132141	Xenopus tropicalis	76.55	0.00e+00	704.00
IUUC-Xma-133980	Xiphophorus maculatus	76.18	0.00e+00	666.00
IUUC-Yli-134457	Yarrowia lipolytica	39.29	1.00e-37	150.00
IUUC-Zma-135321	Zea mays	42.75	5.00e-85	308.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence