iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026708

Ensembl Protein ID

ELA33097

UniProt Accession

L2G3C7; L2G3C7_COLGN

Genbank Protein ID

ELA33097.1

Protein Name

WD domain-containing protein

Genbank Nucleotide ID

KB020669

Gene Name

CGGC5_125

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_125	ELA33097	ELA33097

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-44	146.1	601	639
UBD/Beta-Prp	6.70e-88	294.3	564	721

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +v +++   d +l+v++s D++i++W l+ g++ k
   Q: 601  GHKLPVLSMDIsYDsKLIVTSSADKNIRIWGLDFGDCHK 639
           788899998888455********************9975 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.....sgdk 108
           i cv +spd++++a++  d+t+kv+ +++ kl   l+gh+ +v ++++s d+k++vt+s D++i++w l+ g+c  +l gh+ds+l ++f p     +g++
   Q: 564  ILCVRYSPDGKYIAVSLLDNTVKVFFTDSLKLYLNLYGHKLPVLSMDISYDSKLIVTSSADKNIRIWGLDFGDCHKALFGHQDSILQVAFVPhnsdgNGHH 664
           667******************************************************************************************999999** PP
   S: 109  lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl 166
           + s s+dr i+ wd ++ + ++  l+gh+g v+ ++v  +g+ lv+++ D+ +r+Wd 
   Q: 665  FFSSSKDRCIKYWDGDKFEQIQ-RLDGHHGEVWAMAVGHSGQFLVTAGHDKSIRVWDE 721
           **********************.****************9****************97 PP

Organism

Colletotrichum gloeosporioides

Protein Sequence
(Fasta)

MVKSYLKYEH SKSFGIVASN TSNLVWNAQG RAGAGQAVVA ANEEVLCWDI KKGELVSRWR 60
DDRNTVPVTA IAQSKVDKDV FAVGYEDGSI RLWDSKIATV IVNFNGHKSA ITTLAFDKSG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTGAAGT CATACCTGTA GGTCAATCGC AAACTTCTTC GGTGGAATAT TGACTGACAG 60
GTCTATCATC ACAGAAAGTA TGAGCACAGC AAGTCTTTCG GCATTGTCGC ATCCAACACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000480--P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000447--P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472--P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000784	Aegilops tauschii	36.06	2.00e-129	454.00
IUUC-Aml-001245	Ailuropoda melanoleuca	38.80	7.00e-172	596.00
IUUC-Atr-002700	Amborella trichopoda	35.51	9.00e-149	519.00
IUUC-Apl-004164	Anas platyrhynchos	38.22	4.00e-130	456.00
IUUC-Aca-004765	Anolis carolinensis	36.53	1.00e-165	575.00
IUUC-Aly-006503	Arabidopsis lyrata	36.08	8.00e-157	546.00
IUUC-Ath-006848	Arabidopsis thaliana	35.21	6.00e-157	546.00
IUUC-Ago-007909	Ashbya gossypii	44.72	0.00e+00	759.00
IUUC-Acl-008238	Aspergillus clavatus	63.16	0.00e+00	1230.00
IUUC-Afl-008544	Aspergillus flavus	61.69	0.00e+00	1189.00
IUUC-Afu-008868	Aspergillus fumigatus	62.49	0.00e+00	1226.00
IUUC-Ani-009367	Aspergillus nidulans	60.47	0.00e+00	1150.00
IUUC-Ang-009732	Aspergillus niger	62.38	0.00e+00	1231.00
IUUC-Aor-010140	Aspergillus oryzae	62.08	0.00e+00	1198.00
IUUC-Ate-010572	Aspergillus terreus	60.68	0.00e+00	1184.00
IUUC-Ame-010956	Astyanax mexicanus	44.42	1.00e-135	476.00
IUUC-Bgr-012296	Blumeria graminis	63.95	0.00e+00	1220.00
IUUC-Bta-012716	Bos taurus	38.31	4.00e-174	603.00
IUUC-Bci-013699	Botrytis cinerea	70.50	0.00e+00	1289.00
IUUC-Bdi-014525	Brachypodium distachyon	35.19	2.00e-146	511.00
IUUC-Bol-015117	Brassica oleracea	35.92	2.00e-156	544.00
IUUC-Bra-016869	Brassica rapa	35.85	7.00e-157	546.00
IUUC-Cel-018570	Caenorhabditis elegans	29.13	2.00e-99	355.00
IUUC-Cja-019425	Callithrix jacchus	37.95	1.00e-173	602.00
IUUC-Cfa-020787	Canis familiaris	39.33	7.00e-173	599.00
IUUC-Cpo-021729	Cavia porcellus	41.20	6.00e-140	489.00
IUUC-Cre-022678	Chlamydomonas reinhardtii	42.45	1.00e-97	349.00
IUUC-Csa-024098	Chlorocebus sabaeus	39.11	1.00e-177	615.00
IUUC-Cho-024495	Choloepus hoffmanni	40.96	3.00e-103	367.00
IUUC-Cin-025245	Ciona intestinalis	35.37	4.00e-99	353.00
IUUC-Cne-026835	Cryptococcus neoformans	41.59	0.00e+00	655.00
IUUC-Cme-027162	Cyanidioschyzon merolae	24.57	7.00e-50	191.00
IUUC-Dre-027874	Danio rerio	36.74	5.00e-178	616.00
IUUC-Dno-028905	Dasypus novemcinctus	38.61	8.00e-174	602.00
IUUC-Dor-030383	Dipodomys ordii	41.84	5.00e-62	231.00
IUUC-Dse-031297	Dothistroma septosporum	53.40	0.00e+00	1003.00
IUUC-Dme-031956	Drosophila melanogaster	33.12	3.00e-133	467.00
IUUC-Ete-032608	Echinops telfairi	34.10	2.00e-93	334.00
IUUC-Eca-034181	Equus caballus	38.59	2.00e-169	587.00
IUUC-Eeu-034495	Erinaceus europaeus	39.44	9.00e-167	578.00
IUUC-Fca-035994	Felis catus	40.60	6.00e-169	586.00
IUUC-Fal-036611	Ficedula albicollis	37.29	3.00e-158	550.00
IUUC-Fox-037807	Fusarium oxysporum	78.88	0.00e+00	1506.00
IUUC-Fso-038090	Fusarium solani	80.62	0.00e+00	1504.00
IUUC-Gmo-039018	Gadus morhua	34.19	4.00e-85	307.00
IUUC-Ggr-039748	Gaeumannomyces graminis	73.74	0.00e+00	1411.00
IUUC-Gga-040707	Gallus gallus	43.71	2.00e-134	471.00
IUUC-Gac-042334	Gasterosteus aculeatus	32.17	3.00e-72	264.00
IUUC-Gma-043033	Glycine max	36.30	1.00e-157	548.00
IUUC-Ggo-045334	Gorilla gorilla	38.62	8.00e-175	605.00
IUUC-Hsa-046996	Homo sapiens	38.62	3.00e-174	603.00
IUUC-Hvu-047381	Hordeum vulgare	33.06	1.00e-78	285.00
IUUC-Itr-047938	Ictidomys tridecemlineatus	38.00	1.00e-168	585.00
IUUC-Kpa-049185	Komagataella pastoris	41.01	0.00e+00	714.00
IUUC-Lch-050098	Latimeria chalumnae	35.77	8.00e-156	542.00
IUUC-Lpe-050710	Leersia perrieri	34.54	1.00e-142	498.00
IUUC-Loc-052745	Lepisosteus oculatus	36.72	1.00e-168	585.00
IUUC-Lma-053104	Leptosphaeria maculans	60.68	0.00e+00	1157.00
IUUC-Laf-054395	Loxodonta africana	38.22	3.00e-162	564.00
IUUC-Mcc-055077	Macaca mulatta	39.06	3.00e-175	607.00
IUUC-Meu-056418	Macropus eugenii	41.87	1.00e-93	336.00
IUUC-Mor-057031	Magnaporthe oryzae	72.34	0.00e+00	1286.00
IUUC-Mpo-057420	Magnaporthe poae	74.95	0.00e+00	1404.00
IUUC-Mtr-057838	Medicago truncatula	36.60	1.00e-161	561.00
IUUC-Mla-058854	Melampsora laricipopulina	42.08	0.00e+00	680.00
IUUC-Mga-060120	Meleagris gallopavo	41.05	3.00e-134	471.00
IUUC-Mvi-060407	Microbotryum violaceum	47.07	0.00e+00	805.00
IUUC-Mmr-060635	Microcebus murinus	38.05	1.00e-169	588.00
IUUC-Mdo-063023	Monodelphis domestica	38.17	7.00e-169	586.00
IUUC-Mmu-064103	Mus musculus	38.73	3.00e-177	613.00
IUUC-Mac-065569	Musa acuminata	37.12	2.00e-153	534.00
IUUC-Mpu-066462	Mustela putorius furo	39.19	4.00e-172	597.00
IUUC-Mlu-067894	Myotis lucifugus	39.11	7.00e-172	595.00
IUUC-Nfi-068321	Neosartorya fischeri	63.13	0.00e+00	1222.00
IUUC-Ncr-068661	Neurospora crassa	76.50	0.00e+00	1422.00
IUUC-Nle-069409	Nomascus leucogenys	38.69	1.00e-175	608.00
IUUC-Opr-070445	Ochotona princeps	43.22	2.00e-128	451.00
IUUC-Ont-072339	Oreochromis niloticus	37.80	1.00e-176	611.00
IUUC-Oan-073688	Ornithorhynchus anatinus	37.12	1.00e-157	548.00
IUUC-Ocu-074227	Oryctolagus cuniculus	38.21	4.00e-172	597.00
IUUC-Oba-075635	Oryza barthii	34.95	5.00e-137	480.00
IUUC-Obr-076897	Oryza brachyantha	36.33	1.00e-148	519.00
IUUC-Ogl-077555	Oryza glaberrima	34.85	2.00e-136	478.00
IUUC-Ogu-078724	Oryza glumaepatula	34.88	1.00e-137	482.00
IUUC-Oin-080030	Oryza indica	35.10	8.00e-137	479.00
IUUC-Olo-080687	Oryza longistaminata	33.10	3.00e-126	444.00
IUUC-Ome-081867	Oryza meridionalis	35.10	6.00e-137	479.00
IUUC-Oni-082559	Oryza nivara	35.10	6.00e-137	479.00
IUUC-Opu-083332	Oryza punctata	37.36	2.00e-130	458.00
IUUC-Oru-084455	Oryza rufipogon	34.99	2.00e-136	478.00
IUUC-Osa-085793	Oryza sativa	34.99	2.00e-136	478.00
IUUC-Ola-087395	Oryzias latipes	37.27	4.00e-161	560.00
IUUC-Olu-087768	Ostreococcus lucimarinus	35.94	6.00e-142	496.00
IUUC-Oga-088574	Otolemur garnettii	38.76	4.00e-172	597.00
IUUC-Oar-089453	Ovis aries	38.12	2.00e-173	601.00
IUUC-Ptr-090694	Pan troglodytes	38.62	6.00e-174	602.00
IUUC-Pan-092420	Papio anubis	39.00	2.00e-175	607.00
IUUC-Psi-093683	Pelodiscus sinensis	37.55	5.00e-168	583.00
IUUC-Pma-094197	Petromyzon marinus	34.68	5.00e-30	122.00
IUUC-Pno-094783	Phaeosphaeria nodorum	58.26	0.00e+00	1114.00
IUUC-Ppa-095208	Physcomitrella patens	36.84	4.00e-152	530.00
IUUC-Pfo-096299	Poecilia formosa	37.20	3.00e-179	620.00
IUUC-Pab-098706	Pongo abelii	39.04	1.00e-175	608.00
IUUC-Pop-099275	Populus trichocarpa	36.71	1.00e-154	538.00
IUUC-Pca-100796	Procavia capensis	32.11	2.00e-104	371.00
IUUC-Ppe-101861	Prunus persica	36.36	7.00e-151	526.00
IUUC-Pva-103241	Pteropus vampyrus	36.55	2.00e-156	544.00
IUUC-Pgr-103432	Puccinia graminis	41.70	0.00e+00	665.00
IUUC-Ptt-103742	Puccinia triticina	38.72	5.00e-173	600.00
IUUC-Pte-104069	Pyrenophora teres	61.25	0.00e+00	1127.00
IUUC-Pyt-104650	Pyrenophora triticirepentis	61.15	0.00e+00	1148.00
IUUC-Rno-105219	Rattus norvegicus	38.12	2.00e-170	591.00
IUUC-Sce-106271	Saccharomyces cerevisiae	45.03	0.00e+00	778.00
IUUC-Sha-107550	Sarcophilus harrisii	37.59	8.00e-170	589.00
IUUC-Sja-107664	Schizosaccharomyces japonicus	43.36	0.00e+00	745.00
IUUC-Spo-108239	Schizosaccharomyces pombe	44.61	0.00e+00	769.00
IUUC-Ssl-108626	Sclerotinia sclerotiorum	71.74	0.00e+00	1345.00
IUUC-Smo-109477	Selaginella moellendorffii	36.77	3.00e-156	543.00
IUUC-Sit-110000	Setaria italica	34.89	8.00e-135	473.00
IUUC-Sly-111595	Solanum lycopersicum	36.30	7.00e-155	539.00
IUUC-Stu-112516	Solanum tuberosum	36.70	6.00e-151	526.00
IUUC-Sar-113195	Sorex araneus	43.90	2.00e-118	418.00
IUUC-Sbi-114465	Sorghum bicolor	35.03	1.00e-144	505.00
IUUC-Sre-115006	Sporisorium reilianum	40.57	0.00e+00	698.00
IUUC-Ssc-115929	Sus scrofa	38.23	1.00e-169	588.00
IUUC-Tgu-117282	Taeniopygia guttata	37.40	4.00e-165	573.00
IUUC-Tru-118406	Takifugu rubripes	37.60	2.00e-170	591.00
IUUC-Tsy-119170	Tarsius syrichta	37.53	9.00e-168	582.00
IUUC-Tni-119721	Tetraodon nigroviridis	37.45	1.00e-169	588.00
IUUC-Tca-121761	Theobroma cacao	36.61	4.00e-161	560.00
IUUC-Tre-121908	Trichoderma reesei	77.13	0.00e+00	1455.00
IUUC-Tvi-122547	Trichoderma virens	78.27	0.00e+00	1486.00
IUUC-Tae-125496	Triticum aestivum	36.79	3.00e-141	494.00
IUUC-Tur-126811	Triticum urartu	37.60	1.00e-138	485.00
IUUC-Tme-126987	Tuber melanosporum	59.30	0.00e+00	1132.00
IUUC-Tbe-127315	Tupaia belangeri	45.93	2.00e-112	398.00
IUUC-Ttr-129165	Tursiops truncatus	31.47	1.00e-117	416.00
IUUC-Uma-129651	Ustilago maydis	41.46	0.00e+00	707.00
IUUC-Vda-129973	Verticillium dahliae	84.34	0.00e+00	1542.00
IUUC-Vpa-130163	Vicugna pacos	38.36	7.00e-51	194.00
IUUC-Vvi-131402	Vitis vinifera	36.27	3.00e-153	534.00
IUUC-Xtr-132296	Xenopus tropicalis	37.50	3.00e-170	590.00
IUUC-Xma-133028	Xiphophorus maculatus	37.72	0.00e+00	627.00
IUUC-Yli-134484	Yarrowia lipolytica	45.94	0.00e+00	766.00
IUUC-Zma-135938	Zea mays	34.68	2.00e-142	498.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence