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Tag Content
iUUCD ID IUUC-Aly-006455
Ensembl Protein ID fgenesh2_kg.6__1533__AT5G15550.1
UniProt Accession D7M7D8; D7M7D8_ARALL
Genbank Protein ID EFH49991.1
Protein Name Ribosome biogenesis protein WDR12 homolog
Genbank Nucleotide ID GL348718
Gene Name ARALYDRAFT_488399
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.6__1533__AT5G15550.1 fgenesh2_kg.6__1533__AT5G15550.1 fgenesh2_kg.6__1533__AT5G15550.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 6.50e-28 96.3 357 391
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H+++++++++  s+  +l+s+s+Dg+i++WDlrt 
   Q: 357  HSSWISACKWhkSSwFHLLSASYDGKIMLWDLRTA 391
           ***********977688***************986 PP
   
Organism Arabidopsis lyrata
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MDVDREDVSR RLHVKFVTKL DSPFKVPANS VAIPSNVTRL GLSSIVNSII ESDNPEWKTE 60
PFDFLIDGEL IRMSLEEFLL AKGISAERTL EIEYIRAVTP RKEEEPSLHD DWVSAVNGSS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Aly-006455|E3,WD_repeat|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CATCGCCTCG AGCCAGAACC CTAATTTATC TCCGCGTCTT CTTCTTGCTC CGTAACAGGC 60
CATCGGAGAA GTTAAGAGGC AAAAATGGAT GTCGACAGAG AAGATGTTTC TAGAAGACTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Aly-006455|E3,WD_repeat|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0009506--C:plasmodesma
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
KEGG aly:ARALYDRAFT_488399
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000532 Aegilops tauschii 63.28 4.00e-171 593.00
IUUC-Aml-001997 Ailuropoda melanoleuca 34.05 6.00e-56 210.00
IUUC-Atr-002544 Amborella trichopoda 57.53 1.00e-151 528.00
IUUC-Apl-003981 Anas platyrhynchos 35.07 6.00e-55 207.00
IUUC-Aca-004370 Anolis carolinensis 34.96 1.00e-62 233.00
IUUC-Ath-006669 Arabidopsis thaliana 97.46 0.00e+00 833.00
IUUC-Ago-007864 Ashbya gossypii 32.23 5.00e-49 187.00
IUUC-Acl-008177 Aspergillus clavatus 27.93 7.00e-43 167.00
IUUC-Afl-008617 Aspergillus flavus 29.48 2.00e-40 159.00
IUUC-Afu-008752 Aspergillus fumigatus 27.25 4.00e-40 158.00
IUUC-Ani-009136 Aspergillus nidulans 31.75 1.00e-42 166.00
IUUC-Ang-009701 Aspergillus niger 29.41 7.00e-40 157.00
IUUC-Aor-009884 Aspergillus oryzae 29.25 1.00e-40 159.00
IUUC-Ame-011432 Astyanax mexicanus 33.25 8.00e-63 233.00
IUUC-Bgr-012218 Blumeria graminis 27.87 4.00e-37 148.00
IUUC-Bta-012829 Bos taurus 33.74 4.00e-56 211.00
IUUC-Bci-013953 Botrytis cinerea 26.86 2.00e-39 155.00
IUUC-Bdi-014351 Brachypodium distachyon 62.61 5.00e-160 556.00
IUUC-Bol-016514 Brassica oleracea 83.37 0.00e+00 702.00
IUUC-Bra-016988 Brassica rapa 83.37 0.00e+00 704.00
IUUC-Cel-018569 Caenorhabditis elegans 23.48 2.00e-25 109.00
IUUC-Cja-019468 Callithrix jacchus 34.73 2.00e-54 205.00
IUUC-Cfa-020471 Canis familiaris 34.24 1.00e-54 206.00
IUUC-Cpo-022260 Cavia porcellus 35.47 3.00e-56 211.00
IUUC-Cre-022614 Chlamydomonas reinhardtii 38.27 2.00e-65 241.00
IUUC-Csa-023989 Chlorocebus sabaeus 34.48 3.00e-54 205.00
IUUC-Cho-024426 Choloepus hoffmanni 32.58 3.00e-41 161.00
IUUC-Cin-025789 Ciona intestinalis 28.16 3.00e-50 191.00
IUUC-Cne-027063 Cryptococcus neoformans 27.76 2.00e-28 119.00
IUUC-Dre-027907 Danio rerio 33.73 5.00e-64 237.00
IUUC-Dno-029225 Dasypus novemcinctus 34.24 9.00e-56 210.00
IUUC-Dor-031082 Dipodomys ordii 33.33 5.00e-26 111.00
IUUC-Dse-031308 Dothistroma septosporum 29.10 1.00e-46 180.00
IUUC-Dme-032189 Drosophila melanogaster 30.14 4.00e-48 184.00
IUUC-Ete-032247 Echinops telfairi 31.53 2.00e-48 186.00
IUUC-Eca-034285 Equus caballus 33.74 3.00e-55 208.00
IUUC-Eeu-035322 Erinaceus europaeus 29.98 9.00e-46 176.00
IUUC-Fca-036114 Felis catus 33.99 9.00e-56 210.00
IUUC-Fal-036891 Ficedula albicollis 34.46 3.00e-49 188.00
IUUC-Fox-037965 Fusarium oxysporum 25.98 3.00e-33 135.00
IUUC-Fso-038244 Fusarium solani 26.81 6.00e-34 137.00
IUUC-Gmo-039040 Gadus morhua 34.13 1.00e-64 239.00
IUUC-Ggr-040093 Gaeumannomyces graminis 24.22 2.00e-25 109.00
IUUC-Gga-040610 Gallus gallus 33.99 3.00e-57 215.00
IUUC-Gac-042117 Gasterosteus aculeatus 35.40 1.00e-62 233.00
IUUC-Gma-043146 Glycine max 70.11 0.00e+00 647.00
IUUC-Ggo-045179 Gorilla gorilla 34.73 3.00e-55 208.00
IUUC-Hsa-046114 Homo sapiens 34.48 2.00e-54 206.00
IUUC-Hvu-047331 Hordeum vulgare 65.25 5.00e-152 529.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 34.48 1.00e-56 213.00
IUUC-Kpa-049304 Komagataella pastoris 29.96 2.00e-45 176.00
IUUC-Lch-050655 Latimeria chalumnae 32.45 7.00e-42 163.00
IUUC-Lpe-051675 Leersia perrieri 62.79 1.00e-166 579.00
IUUC-Loc-052868 Lepisosteus oculatus 33.89 8.00e-62 230.00
IUUC-Lma-053258 Leptosphaeria maculans 26.51 1.00e-40 161.00
IUUC-Laf-053993 Loxodonta africana 33.50 2.00e-56 212.00
IUUC-Mcc-055128 Macaca mulatta 27.90 3.00e-33 135.00
IUUC-Meu-056501 Macropus eugenii 34.65 4.00e-48 184.00
IUUC-Mor-057114 Magnaporthe oryzae 25.71 2.00e-36 146.00
IUUC-Mpo-057463 Magnaporthe poae 33.86 4.00e-17 80.50
IUUC-Mtr-058367 Medicago truncatula 67.68 5.00e-173 600.00
IUUC-Mla-059107 Melampsora laricipopulina 26.29 4.00e-36 145.00
IUUC-Mga-059745 Meleagris gallopavo 33.50 2.00e-56 212.00
IUUC-Mvi-060362 Microbotryum violaceum 25.22 2.00e-30 126.00
IUUC-Mdo-062257 Monodelphis domestica 34.13 3.00e-60 225.00
IUUC-Mmu-063546 Mus musculus 33.17 1.00e-55 209.00
IUUC-Mac-065540 Musa acuminata 63.76 2.00e-166 578.00
IUUC-Mpu-066284 Mustela putorius furo 33.99 4.00e-56 211.00
IUUC-Mlu-067241 Myotis lucifugus 34.24 1.00e-56 213.00
IUUC-Nfi-068260 Neosartorya fischeri 27.67 2.00e-41 162.00
IUUC-Ncr-068719 Neurospora crassa 25.52 1.00e-31 130.00
IUUC-Nle-068981 Nomascus leucogenys 34.24 3.00e-54 205.00
IUUC-Opr-071218 Ochotona princeps 32.17 2.00e-52 199.00
IUUC-Ont-071646 Oreochromis niloticus 33.25 1.00e-56 213.00
IUUC-Oan-073453 Ornithorhynchus anatinus 34.60 2.00e-65 242.00
IUUC-Ocu-074008 Oryctolagus cuniculus 33.65 4.00e-57 214.00
IUUC-Oba-075712 Oryza barthii 53.02 1.00e-129 456.00
IUUC-Obr-076721 Oryza brachyantha 61.48 1.00e-164 572.00
IUUC-Ogl-077229 Oryza glaberrima 62.79 4.00e-167 580.00
IUUC-Ogu-078977 Oryza glumaepatula 52.79 2.00e-129 454.00
IUUC-Oin-079683 Oryza indica 62.56 3.00e-166 577.00
IUUC-Olo-080291 Oryza longistaminata 52.15 1.00e-89 321.00
IUUC-Ome-081834 Oryza meridionalis 63.23 7.00e-167 579.00
IUUC-Oni-082507 Oryza nivara 60.00 7.00e-156 542.00
IUUC-Opu-083396 Oryza punctata 63.02 2.00e-167 581.00
IUUC-Oru-085220 Oryza rufipogon 60.00 3.00e-156 543.00
IUUC-Osa-085767 Oryza sativa 62.56 3.00e-166 577.00
IUUC-Ola-087420 Oryzias latipes 34.23 5.00e-62 231.00
IUUC-Olu-087740 Ostreococcus lucimarinus 32.95 3.00e-61 228.00
IUUC-Oga-088264 Otolemur garnettii 33.74 4.00e-54 204.00
IUUC-Oar-089335 Ovis aries 33.99 9.00e-57 213.00
IUUC-Ptr-091320 Pan troglodytes 34.48 2.00e-54 206.00
IUUC-Pan-092833 Papio anubis 34.73 1.00e-54 206.00
IUUC-Psi-093504 Pelodiscus sinensis 33.74 3.00e-56 211.00
IUUC-Pma-094189 Petromyzon marinus 33.10 1.00e-58 219.00
IUUC-Pno-094929 Phaeosphaeria nodorum 27.12 8.00e-40 157.00
IUUC-Ppa-095429 Physcomitrella patens 49.77 3.00e-123 434.00
IUUC-Pfo-096337 Poecilia formosa 33.81 1.00e-62 233.00
IUUC-Pab-097571 Pongo abelii 34.73 1.00e-54 206.00
IUUC-Pop-099977 Populus trichocarpa 71.99 0.00e+00 667.00
IUUC-Pca-100394 Procavia capensis 31.77 4.00e-48 184.00
IUUC-Ppe-101848 Prunus persica 71.89 0.00e+00 675.00
IUUC-Pva-102921 Pteropus vampyrus 33.64 5.00e-25 107.00
IUUC-Pgr-103637 Puccinia graminis 26.67 1.00e-34 140.00
IUUC-Ptt-103781 Puccinia triticina 26.24 9.00e-35 140.00
IUUC-Pte-104135 Pyrenophora teres 28.41 4.00e-40 159.00
IUUC-Pyt-104609 Pyrenophora triticirepentis 28.09 2.00e-42 166.00
IUUC-Rno-105114 Rattus norvegicus 34.73 7.00e-57 213.00
IUUC-Sce-106401 Saccharomyces cerevisiae 29.41 4.00e-46 178.00
IUUC-Sha-107122 Sarcophilus harrisii 34.84 1.00e-57 216.00
IUUC-Sja-107766 Schizosaccharomyces japonicus 26.10 2.00e-38 152.00
IUUC-Spo-108134 Schizosaccharomyces pombe 28.22 8.00e-36 144.00
IUUC-Ssl-108398 Sclerotinia sclerotiorum 27.42 3.00e-41 162.00
IUUC-Smo-108720 Selaginella moellendorffii 46.76 9.00e-116 409.00
IUUC-Sit-110354 Setaria italica 63.19 2.00e-167 581.00
IUUC-Sly-111023 Solanum lycopersicum 64.15 2.00e-169 587.00
IUUC-Stu-112778 Solanum tuberosum 69.41 6.00e-176 609.00
IUUC-Sar-113596 Sorex araneus 30.49 1.00e-41 162.00
IUUC-Sbi-114193 Sorghum bicolor 62.41 2.00e-157 548.00
IUUC-Sre-115002 Sporisorium reilianum 25.95 3.00e-19 89.40
IUUC-Ssc-116066 Sus scrofa 34.24 3.00e-56 211.00
IUUC-Tgu-117048 Taeniopygia guttata 34.79 4.00e-54 204.00
IUUC-Tsy-119573 Tarsius syrichta 23.15 2.00e-15 75.90
IUUC-Tni-119820 Tetraodon nigroviridis 35.46 2.00e-61 229.00
IUUC-Tca-121605 Theobroma cacao 74.02 0.00e+00 677.00
IUUC-Tre-121947 Trichoderma reesei 27.03 2.00e-37 149.00
IUUC-Tvi-122481 Trichoderma virens 27.29 7.00e-37 147.00
IUUC-Tae-123504 Triticum aestivum 63.51 9.00e-172 595.00
IUUC-Tur-126586 Triticum urartu 65.00 8.00e-160 555.00
IUUC-Tme-126900 Tuber melanosporum 30.16 1.00e-49 189.00
IUUC-Tbe-127736 Tupaia belangeri 27.08 1.00e-28 120.00
IUUC-Ttr-129041 Tursiops truncatus 29.31 2.00e-39 155.00
IUUC-Uma-129628 Ustilago maydis 31.25 1.00e-07 50.80
IUUC-Vpa-130260 Vicugna pacos 34.24 2.00e-56 212.00
IUUC-Vvi-131009 Vitis vinifera 73.33 0.00e+00 675.00
IUUC-Xtr-132083 Xenopus tropicalis 34.38 5.00e-61 227.00
IUUC-Xma-133094 Xiphophorus maculatus 33.33 5.00e-62 230.00
IUUC-Yli-134531 Yarrowia lipolytica 26.81 2.00e-33 136.00
IUUC-Zma-135509 Zea mays 62.73 1.00e-164 572.00
Created Date 25-Jun-2017

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