iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ptt-103781

Ensembl Protein ID

PTTG_00878P0

UniProt Accession

A0A0C4EJG0; A0A0C4EJG0_PUCT1

Genbank Protein ID

OAV88491.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

ADAS01000930

Gene Name

YTM1; PTTG_00878

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PTTG_00878	PTTG_00878T0	PTTG_00878P0

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.80e-29	97.6	392	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.....sdtllvsGsdDgtikvWDlrtg 33
           gH+++v+ ++      ++  ++sGs+Dgt+k+WD+r+ 
   Q: 392  GHSAPVSTVSSnpsraNSLQILSGSYDGTCKIWDTRST 429
           788999998767666544669*************9875 PP

Organism

Puccinia triticina

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MALTAIQSES ITSTTAQKQQ TMITVRLTTK SIRYSIPNAK YLVPSDWKRF QLSQLINKVL 60
QLDQPVPFDF VVNDQLLRTS VKSFIDSRGL STESVLEIEY LESVLPPKFI QSLEHDDWIS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTTAA CTGCCATCCA ATCAGAGAGC ATAACATCTA CTACTGCGCA GAAGCAGCAA 60
ACGATGATCA CTGTCAGATT GACAACCAAG TCGATTCGAT ACTCAATACC CAATGCCAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	27.02	4.00e-39	153.00
IUUC-Aml-001997	Ailuropoda melanoleuca	28.57	2.00e-33	134.00
IUUC-Atr-002544	Amborella trichopoda	24.47	2.00e-33	134.00
IUUC-Apl-003981	Anas platyrhynchos	29.59	2.00e-35	140.00
IUUC-Aca-004370	Anolis carolinensis	29.49	3.00e-43	166.00
IUUC-Aly-006455	Arabidopsis lyrata	26.67	9.00e-38	149.00
IUUC-Ath-006669	Arabidopsis thaliana	26.13	2.00e-33	134.00
IUUC-Ago-007864	Ashbya gossypii	28.60	6.00e-46	176.00
IUUC-Acl-008177	Aspergillus clavatus	29.53	7.00e-54	202.00
IUUC-Afl-008617	Aspergillus flavus	29.37	3.00e-49	187.00
IUUC-Afu-008752	Aspergillus fumigatus	28.14	9.00e-46	175.00
IUUC-Ani-009136	Aspergillus nidulans	29.92	9.00e-52	195.00
IUUC-Ang-009701	Aspergillus niger	29.47	2.00e-45	174.00
IUUC-Aor-009884	Aspergillus oryzae	29.37	5.00e-49	186.00
IUUC-Ate-010472	Aspergillus terreus	26.55	5.00e-19	86.30
IUUC-Ame-011432	Astyanax mexicanus	27.56	6.00e-43	166.00
IUUC-Bgr-012218	Blumeria graminis	28.21	2.00e-45	174.00
IUUC-Bta-012829	Bos taurus	29.03	2.00e-35	141.00
IUUC-Bci-013953	Botrytis cinerea	26.10	7.00e-45	172.00
IUUC-Bdi-014351	Brachypodium distachyon	29.15	9.00e-41	159.00
IUUC-Bol-016190	Brassica oleracea	26.46	5.00e-34	136.00
IUUC-Bra-016988	Brassica rapa	25.73	3.00e-34	137.00
IUUC-Cel-018569	Caenorhabditis elegans	22.47	3.00e-17	80.50
IUUC-Cja-019468	Callithrix jacchus	28.60	8.00e-33	132.00
IUUC-Cfa-020471	Canis familiaris	27.53	6.00e-31	126.00
IUUC-Cpo-022260	Cavia porcellus	28.39	3.00e-33	133.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	26.12	2.00e-34	137.00
IUUC-Csa-023989	Chlorocebus sabaeus	28.82	2.00e-33	134.00
IUUC-Cho-024426	Choloepus hoffmanni	28.11	1.00e-24	105.00
IUUC-Cin-025789	Ciona intestinalis	27.84	2.00e-35	140.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	32.00	2.00e-08	50.10
IUUC-Cne-027063	Cryptococcus neoformans	29.94	6.00e-55	206.00
IUUC-Dre-027907	Danio rerio	28.82	7.00e-45	172.00
IUUC-Dno-029225	Dasypus novemcinctus	29.21	2.00e-35	140.00
IUUC-Dor-031082	Dipodomys ordii	26.24	2.00e-14	71.60
IUUC-Dse-031308	Dothistroma septosporum	28.89	3.00e-50	190.00
IUUC-Dme-032189	Drosophila melanogaster	26.20	5.00e-28	116.00
IUUC-Ete-032247	Echinops telfairi	27.31	3.00e-28	117.00
IUUC-Eca-034285	Equus caballus	29.46	3.00e-35	140.00
IUUC-Eeu-035322	Erinaceus europaeus	25.71	3.00e-24	103.00
IUUC-Fca-036114	Felis catus	28.82	1.00e-34	138.00
IUUC-Fal-036891	Ficedula albicollis	28.31	2.00e-29	120.00
IUUC-Fox-037965	Fusarium oxysporum	29.92	2.00e-49	187.00
IUUC-Fso-038244	Fusarium solani	30.48	2.00e-47	181.00
IUUC-Gmo-039040	Gadus morhua	28.94	8.00e-46	175.00
IUUC-Ggr-040093	Gaeumannomyces graminis	26.42	2.00e-38	151.00
IUUC-Gga-040610	Gallus gallus	29.42	1.00e-39	155.00
IUUC-Gac-042117	Gasterosteus aculeatus	29.57	5.00e-46	176.00
IUUC-Gma-043756	Glycine max	28.45	9.00e-42	162.00
IUUC-Ggo-045179	Gorilla gorilla	28.60	3.00e-33	133.00
IUUC-Hsa-046114	Homo sapiens	28.82	2.00e-33	134.00
IUUC-Hvu-047331	Hordeum vulgare	27.17	2.00e-34	137.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	28.82	4.00e-34	136.00
IUUC-Kpa-049304	Komagataella pastoris	32.30	3.00e-54	203.00
IUUC-Lch-050655	Latimeria chalumnae	27.20	5.00e-29	119.00
IUUC-Lpe-051675	Leersia perrieri	26.97	1.00e-37	148.00
IUUC-Loc-052868	Lepisosteus oculatus	29.12	2.00e-41	161.00
IUUC-Lma-053258	Leptosphaeria maculans	26.69	5.00e-40	158.00
IUUC-Laf-053993	Loxodonta africana	28.82	2.00e-35	140.00
IUUC-Mcc-055128	Macaca mulatta	24.13	1.00e-15	75.10
IUUC-Meu-056501	Macropus eugenii	29.19	5.00e-27	113.00
IUUC-Mor-057114	Magnaporthe oryzae	28.32	8.00e-47	179.00
IUUC-Mpo-057463	Magnaporthe poae	30.29	4.00e-22	95.90
IUUC-Mtr-058367	Medicago truncatula	28.18	1.00e-31	128.00
IUUC-Mla-059107	Melampsora laricipopulina	61.13	1.00e-169	587.00
IUUC-Mga-059745	Meleagris gallopavo	29.06	1.00e-36	145.00
IUUC-Mvi-060362	Microbotryum violaceum	37.27	4.00e-80	289.00
IUUC-Mdo-062257	Monodelphis domestica	30.28	1.00e-40	158.00
IUUC-Mmu-063546	Mus musculus	28.57	4.00e-35	140.00
IUUC-Mac-065540	Musa acuminata	29.05	9.00e-43	165.00
IUUC-Mpu-066284	Mustela putorius furo	28.15	2.00e-34	138.00
IUUC-Mlu-067241	Myotis lucifugus	29.25	4.00e-35	140.00
IUUC-Nfi-068260	Neosartorya fischeri	28.94	1.00e-48	184.00
IUUC-Ncr-068719	Neurospora crassa	28.57	1.00e-43	168.00
IUUC-Nle-068981	Nomascus leucogenys	28.60	1.00e-31	128.00
IUUC-Opr-071218	Ochotona princeps	26.18	3.00e-30	123.00
IUUC-Ont-071646	Oreochromis niloticus	30.84	2.00e-41	161.00
IUUC-Oan-073453	Ornithorhynchus anatinus	29.12	4.00e-44	169.00
IUUC-Ocu-074008	Oryctolagus cuniculus	28.60	2.00e-35	140.00
IUUC-Oba-075712	Oryza barthii	25.79	9.00e-26	108.00
IUUC-Obr-076721	Oryza brachyantha	26.44	4.00e-35	140.00
IUUC-Ogl-077229	Oryza glaberrima	26.86	2.00e-35	141.00
IUUC-Ogu-078977	Oryza glumaepatula	25.47	4.00e-26	110.00
IUUC-Oin-079683	Oryza indica	26.56	1.00e-36	144.00
IUUC-Olo-080291	Oryza longistaminata	24.19	3.00e-22	97.10
IUUC-Ome-081834	Oryza meridionalis	26.60	2.00e-36	144.00
IUUC-Oni-082507	Oryza nivara	26.14	1.00e-32	131.00
IUUC-Opu-083396	Oryza punctata	27.45	6.00e-37	146.00
IUUC-Oru-085220	Oryza rufipogon	26.14	5.00e-32	129.00
IUUC-Osa-085767	Oryza sativa	26.56	1.00e-36	144.00
IUUC-Ola-087420	Oryzias latipes	28.91	2.00e-44	171.00
IUUC-Olu-087740	Ostreococcus lucimarinus	23.68	1.00e-22	98.60
IUUC-Oga-088264	Otolemur garnettii	28.48	2.00e-32	130.00
IUUC-Oar-089335	Ovis aries	27.74	2.00e-33	134.00
IUUC-Ptr-091320	Pan troglodytes	28.82	2.00e-33	134.00
IUUC-Pan-092833	Papio anubis	28.48	2.00e-33	134.00
IUUC-Psi-093504	Pelodiscus sinensis	30.97	2.00e-37	147.00
IUUC-Pma-094189	Petromyzon marinus	27.35	7.00e-35	139.00
IUUC-Pno-094929	Phaeosphaeria nodorum	27.38	1.00e-41	161.00
IUUC-Ppa-095429	Physcomitrella patens	26.36	1.00e-41	162.00
IUUC-Pfo-096337	Poecilia formosa	28.60	3.00e-45	174.00
IUUC-Pab-097571	Pongo abelii	29.25	1.00e-33	135.00
IUUC-Pop-099977	Populus trichocarpa	26.97	1.00e-35	142.00
IUUC-Pca-100394	Procavia capensis	28.01	2.00e-25	108.00
IUUC-Ppe-101848	Prunus persica	29.29	4.00e-42	163.00
IUUC-Pva-102921	Pteropus vampyrus	26.72	2.00e-13	67.80
IUUC-Pgr-103637	Puccinia graminis	90.76	0.00e+00	879.00
IUUC-Pte-104135	Pyrenophora teres	26.64	2.00e-36	146.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	26.53	6.00e-37	146.00
IUUC-Rno-105114	Rattus norvegicus	29.03	3.00e-35	140.00
IUUC-Sce-106401	Saccharomyces cerevisiae	26.88	2.00e-45	174.00
IUUC-Sha-107122	Sarcophilus harrisii	29.21	3.00e-36	144.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	31.13	1.00e-54	204.00
IUUC-Spo-108134	Schizosaccharomyces pombe	30.02	8.00e-46	175.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.49	3.00e-46	177.00
IUUC-Smo-108761	Selaginella moellendorffii	28.09	1.00e-36	144.00
IUUC-Sit-110354	Setaria italica	26.81	6.00e-38	149.00
IUUC-Sly-111178	Solanum lycopersicum	25.94	1.00e-36	145.00
IUUC-Stu-112778	Solanum tuberosum	26.32	2.00e-36	144.00
IUUC-Sar-113596	Sorex araneus	26.00	1.00e-18	85.50
IUUC-Sbi-114193	Sorghum bicolor	26.46	5.00e-37	146.00
IUUC-Sre-115002	Sporisorium reilianum	26.03	6.00e-47	179.00
IUUC-Ssc-116066	Sus scrofa	28.60	1.00e-34	138.00
IUUC-Tgu-117048	Taeniopygia guttata	29.72	3.00e-34	136.00
IUUC-Tni-119820	Tetraodon nigroviridis	29.98	3.00e-41	160.00
IUUC-Tca-121605	Theobroma cacao	27.49	2.00e-38	151.00
IUUC-Tre-121947	Trichoderma reesei	29.92	1.00e-47	182.00
IUUC-Tvi-122481	Trichoderma virens	30.14	2.00e-48	184.00
IUUC-Tae-123847	Triticum aestivum	27.02	4.00e-39	153.00
IUUC-Tur-126586	Triticum urartu	27.05	1.00e-35	141.00
IUUC-Tme-126900	Tuber melanosporum	28.69	7.00e-49	186.00
IUUC-Tbe-127736	Tupaia belangeri	21.74	2.00e-13	67.80
IUUC-Ttr-129041	Tursiops truncatus	32.52	3.00e-17	80.90
IUUC-Uma-129628	Ustilago maydis	26.56	6.00e-41	159.00
IUUC-Vpa-130260	Vicugna pacos	28.82	6.00e-35	139.00
IUUC-Vvi-131009	Vitis vinifera	28.66	4.00e-44	169.00
IUUC-Xtr-132083	Xenopus tropicalis	29.61	2.00e-41	160.00
IUUC-Xma-133094	Xiphophorus maculatus	29.03	2.00e-46	177.00
IUUC-Yli-134531	Yarrowia lipolytica	26.73	7.00e-34	136.00
IUUC-Zma-135509	Zea mays	26.38	2.00e-39	154.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence