iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-108761

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

GL377610

Gene Name

SELMODRAFT_112898

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_112898	EFJ18414	EFJ18414

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-36	122.6	356	395

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllks 38
           Ht++++++++  ++ ++l+++s+Dgt+k+WD+r+ v+l++
   Q: 356  HTSWISSCKWhrQSpKHLLTSSYDGTVKMWDIRSKVPLQT 395
           ***********9555*******************999986 PP

Organism

Selaginella moellendorffii

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDAGERQVQV RFTTRLGSDL RVEATAFSLP VHLNRYGLSQ IINTLLALDG PRPFDFLFDG 60
ELIRTTLEQL YLSKNLSAES ILVLEYILAV GPPELQSSQP EKDWVSAVNG VNPSLILSGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATGCTG GGGAGCGCCA AGTCCAGGTG CGATTCACGA CGCGGCTGGG GAGCGATCTT 60
CGCGTGGAAG CCACCGCATT CTCGCTACCC GTGCATCTCA ATCGCTACGG CCTCTCGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

smo:SELMODRAFT_112898

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ago-007864	Ashbya gossypii	30.41	9.00e-44	170.00
IUUC-Afu-008752	Aspergillus fumigatus	27.49	1.00e-31	129.00
IUUC-Bgr-012218	Blumeria graminis	28.03	5.00e-36	144.00
IUUC-Cel-018569	Caenorhabditis elegans	24.71	9.00e-28	117.00
IUUC-Cin-025789	Ciona intestinalis	34.26	4.00e-56	211.00
IUUC-Kpa-049304	Komagataella pastoris	29.48	3.00e-47	181.00
IUUC-Mor-057114	Magnaporthe oryzae	27.55	2.00e-29	122.00
IUUC-Mga-059745	Meleagris gallopavo	33.01	2.00e-52	199.00
IUUC-Mvi-060362	Microbotryum violaceum	26.50	1.00e-32	133.00
IUUC-Mdo-062257	Monodelphis domestica	33.33	1.00e-56	213.00
IUUC-Nfi-068260	Neosartorya fischeri	28.64	1.00e-32	133.00
IUUC-Ncr-068719	Neurospora crassa	26.67	3.00e-26	112.00
IUUC-Obr-076721	Oryza brachyantha	48.36	2.00e-115	407.00
IUUC-Pgr-103637	Puccinia graminis	26.38	6.00e-30	124.00
IUUC-Ptt-103781	Puccinia triticina	25.88	5.00e-30	124.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	28.60	3.00e-35	142.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.70	2.00e-47	182.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	29.80	6.00e-42	164.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence