iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112169

Ensembl Protein ID

PGSC0003DMT400004146

UniProt Accession

M0ZMY9; M0ZMY9_SOLTU

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400001639	PGSC0003DMT400004143	PGSC0003DMT400004143
PGSC0003DMG400001639	PGSC0003DMT400004144	PGSC0003DMT400004144
PGSC0003DMG400001639	PGSC0003DMT400004146	PGSC0003DMT400004146

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.50e-28	97.7	361	395

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H+++++ +++   +  +l+s+s+Dg++++WDlrt 
   Q: 361  HSSWISTCKWheKSrFHLLSASYDGKVMLWDLRTA 395
           9*********9944478***************986 PP

Organism

Solanum tuberosum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MDINGQVEEA ARRVQVRFVT KLKSPFKAPP TSIAIPSNLT RLGLSSIVNN LLKAGKDDWN 60
PEPFDFLIDG ELVRMSLEEF LLAKGISAEK ILEIEYIRAV APRKQEEPSL HDDWVSAVDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGAATTTGG CTGTGAACGT CTTCCTCATA CTCTCTAAAA CAGTATAGTA GTGTTTTTTT 60
TTATGGCGGA AATGGATATT AATGGGCAGG TCGAAGAGGC TGCAAGGCGT GTACAGGTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ang-009701	Aspergillus niger	29.52	1.00e-39	156.00
IUUC-Aor-009884	Aspergillus oryzae	29.73	1.00e-41	162.00
IUUC-Bgr-012218	Blumeria graminis	28.91	3.00e-39	155.00
IUUC-Bci-013953	Botrytis cinerea	30.86	8.00e-45	173.00
IUUC-Fox-037965	Fusarium oxysporum	25.50	3.00e-33	135.00
IUUC-Gma-043146	Glycine max	70.32	0.00e+00	629.00
IUUC-Kpa-049304	Komagataella pastoris	30.56	6.00e-47	180.00
IUUC-Lma-053258	Leptosphaeria maculans	29.98	4.00e-44	172.00
IUUC-Mor-057114	Magnaporthe oryzae	27.15	3.00e-38	151.00
IUUC-Mpo-057463	Magnaporthe poae	33.86	3.00e-17	80.50
IUUC-Ncr-068719	Neurospora crassa	26.25	2.00e-35	142.00
IUUC-Pno-094929	Phaeosphaeria nodorum	28.31	3.00e-41	161.00
IUUC-Pte-104135	Pyrenophora teres	29.15	2.00e-42	167.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	28.51	2.00e-44	172.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.60	1.00e-48	186.00
IUUC-Sly-111023	Solanum lycopersicum	89.57	0.00e+00	798.00
IUUC-Tbe-127736	Tupaia belangeri	28.19	2.00e-30	125.00
IUUC-Uma-129628	Ustilago maydis	29.29	1.00e-11	63.20
IUUC-Yli-134531	Yarrowia lipolytica	28.38	7.00e-36	143.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence