iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099526

Ensembl Protein ID

POPTR_0005s15080.1

UniProt Accession

U5GIC5; U5GIC5_POPTR

Genbank Protein ID

ERP61192.1

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_711471; POPTR_0005s15080g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s15080	POPTR_0005s15080.1	POPTR_0005s15080.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-20	72.7	93	127

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcl.afsdtllvsGsdDgtikvWDlrtgvl 35
           H+d +++l ++++ ++++G d g +kvWD+r++ +
   Q: 93   HEDAIFSLiNLTESTVATGDDQGCVKVWDTRQHSC 127
           9******725655689***************9988 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEIDLGKVPF TMDFHPSDNL VTAGLITGDL HLYRFNADSS PQRLLEIHAH SESCRAARFI 60
NDGHAIITGS SDRSILATDL ETGSPIARLE NAHEDAIFSL INLTESTVAT GDDQGCVKVW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAAGAAC GTACTTCCTC CACTCCCTCT CATAAACCCT AGCAAACCCC CTCTCTCCCC 60
ACCTTTTCCC CGCTTCCTAA TTCTCACCGA AGCCTCCACC GATCACCGGC CCGCTCTCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR017422--WDR55

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

KEGG

pop:POPTR_0005s15080g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Acl-008007	Aspergillus clavatus	23.74	2.00e-11	63.20
IUUC-Cme-027192	Cyanidioschyzon merolae	26.35	2.00e-22	99.80
IUUC-Ggr-039978	Gaeumannomyces graminis	26.28	3.00e-17	82.40
IUUC-Gma-044122	Glycine max	77.20	1.00e-148	518.00
IUUC-Mor-056995	Magnaporthe oryzae	23.77	1.00e-14	73.90
IUUC-Mpo-057482	Magnaporthe poae	25.94	5.00e-17	81.30
IUUC-Ncr-068919	Neurospora crassa	23.67	8.00e-11	60.80
IUUC-Oan-073163	Ornithorhynchus anatinus	44.55	2.00e-20	90.90
IUUC-Psi-093609	Pelodiscus sinensis	35.88	9.00e-46	177.00
IUUC-Pno-094833	Phaeosphaeria nodorum	28.17	2.00e-13	69.70
IUUC-Sja-107829	Schizosaccharomyces japonicus	29.67	2.00e-18	86.70
IUUC-Spo-108122	Schizosaccharomyces pombe	29.21	3.00e-23	102.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence