iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006756

UUCD1 version

UUC-ArT-00575

Ensembl Protein ID

AT5G08139.1

UniProt Accession

Q8GYG0; Q8GYG0_ARATH

Genbank Protein ID

AED91256.1; BAC42311.1; BAD93876.1; BAD95088.1

Protein Name

Putative uncharacterized protein At5g08139; Putative uncharacterized protein At5g08139/At5g08140; RING/U-box superfamily protein

Genbank Nucleotide ID

CP002688; AK117658; AK221247; AK220636

Gene Name

At5g08139; At5g08139/At5g08140

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G08139	AT5G08139.2	AT5G08139.2
AT5G08139	AT5G08139.1	AT5G08139.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.40e-07	31.6	309	350

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+C++++    +  + lpC+H +h +C+  w       + + +CP+Cr
   Q: 309  CAVCKDEMnigNK-AVQLPCNHKYHSECIVPW------LKVRNTCPVCR 350
           ********88544.888***************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS 60
VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA SSGNDIRLIT VESGSDDDDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGAGATTCTC CGTGATAACA GGCCAATATT TCGGCCTGGC CCATTCAAGC GATTCTCGAG 60
CCGAGAATAT GACTGAGGGA CAAAATCGTC ATTTTAAGGT TACTCCACAA AAGGAGTAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005519	Arabidopsis lyrata	83.64	7.00e-150	522.00
IUUC-Bol-015556	Brassica oleracea	53.35	3.00e-79	287.00
IUUC-Bra-017981	Brassica rapa	53.40	2.00e-84	305.00
IUUC-Gma-043673	Glycine max	41.89	2.00e-35	142.00
IUUC-Ncr-068908	Neurospora crassa	40.35	2.00e-18	86.30
IUUC-Ome-081782	Oryza meridionalis	39.29	3.00e-24	104.00
IUUC-Olu-087587	Ostreococcus lucimarinus	47.62	4.00e-11	62.40
IUUC-Pop-099600	Populus trichocarpa	47.20	4.00e-45	174.00
IUUC-Ppe-101286	Prunus persica	45.52	1.00e-48	186.00
IUUC-Sly-111587	Solanum lycopersicum	42.22	9.00e-40	157.00
IUUC-Stu-112460	Solanum tuberosum	42.98	4.00e-42	164.00
IUUC-Tca-121330	Theobroma cacao	39.79	2.00e-54	206.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence