iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099797

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000352

Gene Name

POPTRDRAFT_735061; POPTR_0016s05880g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0016s05880	POPTR_0016s05880.1	POPTR_0016s05880.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.90e-07	31.1	136	191
E3 activity/RING/RING	4.70e-06	28.1	139	180

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl..asggktcPvtrqplteedlvPn 58
           +f C I l+l +dPvv+++G+ +   ++ +wl   s+ k+cPv++ ++t ++++P 
   Q: 136  FFDCNICLDLATDPVVTCCGHLFCWPCLYQWLhvHSDAKECPVCKGEVTMKNVTPI 191
           79******************************87777779**************97 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl+   d p+v+ CgH+f+  Cl++w    ++ s +  CP+C+
   Q: 139  CNICLDLATD-PVVTCCGHLFCWPCLYQW---LHVHSDAKECPVCK 180
           99******99.999***************...556899999****7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDEETSDTMN LDLNLGPGPE AESELEAPND AVNLDDWVDD PIVRIREAVR FRARQHRRWR 60
QFQLPLQSQS LSVELNQLMG NPGHVGTLQA GEGSVAAEER TNEAPKLCEN NNVFLEDEVS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGGGATCAC AACCACGTAT GTCGAGTCTA CTCGGAGCTA ACTCAGCACC GAGTCTCGAA 60
AGAATCTTTA TCTAATTTAT CAAGATCGTC TGTTTAAGTA TCATCAGGTC TTTCAATCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0016s05880g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002855	Amborella trichopoda	36.80	2.00e-37	149.00
IUUC-Cgl-026743	Colletotrichum gloeosporioides	44.64	8.00e-10	57.80
IUUC-Fso-038195	Fusarium solani	41.98	9.00e-12	64.30
IUUC-Mac-064953	Musa acuminata	48.85	2.00e-35	143.00
IUUC-Oba-075089	Oryza barthii	51.64	2.00e-34	140.00
IUUC-Ogl-077589	Oryza glaberrima	51.64	2.00e-34	140.00
IUUC-Olo-080972	Oryza longistaminata	64.52	1.00e-33	137.00
IUUC-Opu-083703	Oryza punctata	54.78	7.00e-34	137.00
IUUC-Ppa-095532	Physcomitrella patens	65.22	1.00e-27	117.00
IUUC-Sit-110715	Setaria italica	49.32	9.00e-35	140.00
IUUC-Sly-111147	Solanum lycopersicum	52.48	5.00e-105	374.00
IUUC-Stu-112419	Solanum tuberosum	51.99	4.00e-106	377.00
IUUC-Vda-129983	Verticillium dahliae	44.23	7.00e-10	56.20

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence