iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Mdo-062121

UUCD1 version

UUC-MoD-00318

Ensembl Protein ID

ENSMODP00000021306.2

UniProt Accession

F6VKV2; F6VKV2_MONDO

Protein Name

Uncharacterized protein

Gene Name

SNRNP40

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMODG00000017078.3	ENSMODT00000021680.3	ENSMODP00000021306.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-45	149.7	153	187
UBD/Beta-Prp	5.20e-79	265.7	66	269

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gHt+ v+++     +  l+++GsdDgt+k+WD+r+
   Q: 153  GHTSFVNSCYParRGpQLVCTGSDDGTVKLWDIRK 187
           8*******9659955588999***********886 PP

UBD/Beta-Prp

   S: 48   lsgheaevtavkfspdgkilvtgseDrtikvwdls.tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsg 135
           lsghe+ev++ kf+p+g++l++++ Dr+i +w++  +++   tlkgh+  v+ l+++ +g+ l s+s d+t+ vwd etg+ ++  l+g
   Q: 66   LSGHEGEVYCSKFHPNGSTLASAGFDRLILLWNVYgDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERIK-RLKG 153
           8*******************************8765999*********************************************.**** PP
   S: 136  hdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtd 223
           h+++vn+      g +l+ +Gs+D+tv+lWd++ +  ++t++  +t +v  ++f++++ +++sg+ d+++k+wdl++++  +t++gh d
   Q: 154  HTSFVNSCYPARRGpQLVCTGSDDGTVKLWDIRKKAAVQTFQ--NTYQVLTVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHAD 240
           *****************************************7..6******************************************** PP
   S: 224  nvksvrfspnderlvsgssDgsiriWdlr 252
            v+ + +s+++ +l+s ++D+++riWd+r
   Q: 241  SVTGLSLSSEGSYLLSNAMDNTVRIWDVR 269
           ***************************87 PP

Organism

Monodelphis domestica

Protein Sequence
(Fasta)

MIEQHKRKGP ELPLVPLKRP RHELLLGAAG PGAGAGPAAG QQPPPGALLQ AGPPRCSSLQ 60
APIMLLSGHE GEVYCSKFHP NGSTLASAGF DRLILLWNVY GDCDNYATLK GHSGAVMELH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAATCCCCGA ATGCCCACCT GCCCGTAGCG CCGGGCAGTC CCCAATTCAA ACCCTATTAC 60
TTGAGTACTT ACTCGGACGC CCACTGGGCA CAAAATCTAA GAGGAAGCTG CCATGCAGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0005829--C:cytosol
GO:0016607--C:nuclear speck
GO:0071011--C:precatalytic spliceosome
GO:0005682--C:U5 snRNP
GO:0003723--F:RNA binding
GO:0008380--P:RNA splicing

KEGG

mdo:100027017

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000138	Aegilops tauschii	58.39	1.00e-118	419.00
IUUC-Aml-001428	Ailuropoda melanoleuca	93.04	7.00e-176	609.00
IUUC-Atr-003164	Amborella trichopoda	59.31	2.00e-121	428.00
IUUC-Apl-003447	Anas platyrhynchos	97.21	7.00e-161	559.00
IUUC-Aca-004270	Anolis carolinensis	90.61	2.00e-167	581.00
IUUC-Aly-005659	Arabidopsis lyrata	62.14	2.00e-123	434.00
IUUC-Ath-006764	Arabidopsis thaliana	61.49	6.00e-123	433.00
IUUC-Acl-008324	Aspergillus clavatus	49.36	8.00e-93	333.00
IUUC-Afl-008607	Aspergillus flavus	50.00	4.00e-89	320.00
IUUC-Afu-008998	Aspergillus fumigatus	49.04	2.00e-92	332.00
IUUC-Ani-009363	Aspergillus nidulans	49.04	8.00e-94	337.00
IUUC-Ang-009513	Aspergillus niger	48.51	7.00e-84	303.00
IUUC-Aor-010237	Aspergillus oryzae	50.64	2.00e-94	338.00
IUUC-Ate-010374	Aspergillus terreus	45.86	2.00e-81	295.00
IUUC-Ame-010728	Astyanax mexicanus	81.54	1.00e-169	588.00
IUUC-Bgr-012297	Blumeria graminis	46.89	3.00e-70	258.00
IUUC-Bta-012433	Bos taurus	91.97	0.00e+00	635.00
IUUC-Bci-013763	Botrytis cinerea	51.11	6.00e-94	337.00
IUUC-Bdi-014490	Brachypodium distachyon	58.71	2.00e-118	418.00
IUUC-Bol-016479	Brassica oleracea	60.90	3.00e-123	434.00
IUUC-Bra-017219	Brassica rapa	61.17	4.00e-123	434.00
IUUC-Cel-018512	Caenorhabditis elegans	57.56	7.00e-113	400.00
IUUC-Cja-019308	Callithrix jacchus	93.07	0.00e+00	637.00
IUUC-Cfa-020998	Canis familiaris	93.91	0.00e+00	641.00
IUUC-Cpo-021580	Cavia porcellus	90.86	0.00e+00	637.00
IUUC-Cre-022859	Chlamydomonas reinhardtii	55.41	2.00e-107	382.00
IUUC-Csa-023456	Chlorocebus sabaeus	93.07	0.00e+00	640.00
IUUC-Cho-024644	Choloepus hoffmanni	97.74	5.00e-177	613.00
IUUC-Cin-025463	Ciona intestinalis	58.91	6.00e-127	447.00
IUUC-Cgl-026497	Colletotrichum gloeosporioides	48.87	9.00e-94	336.00
IUUC-Cne-026780	Cryptococcus neoformans	42.72	7.00e-66	244.00
IUUC-Dre-027671	Danio rerio	80.17	3.00e-175	607.00
IUUC-Dno-029769	Dasypus novemcinctus	93.63	0.00e+00	650.00
IUUC-Dor-030776	Dipodomys ordii	90.06	2.00e-83	301.00
IUUC-Dse-031316	Dothistroma septosporum	44.59	8.00e-85	306.00
IUUC-Dme-031756	Drosophila melanogaster	61.34	8.00e-124	436.00
IUUC-Ete-032753	Echinops telfairi	85.87	3.00e-160	557.00
IUUC-Eca-033979	Equus caballus	91.69	0.00e+00	635.00
IUUC-Eeu-034862	Erinaceus europaeus	98.56	7.00e-72	264.00
IUUC-Fca-036110	Felis catus	92.60	2.00e-154	538.00
IUUC-Fal-037648	Ficedula albicollis	97.10	3.00e-175	607.00
IUUC-Fox-037861	Fusarium oxysporum	46.93	2.00e-91	328.00
IUUC-Fso-038405	Fusarium solani	46.93	4.00e-91	328.00
IUUC-Gmo-039383	Gadus morhua	81.82	8.00e-171	592.00
IUUC-Ggr-040082	Gaeumannomyces graminis	45.71	3.00e-82	298.00
IUUC-Gga-040785	Gallus gallus	90.08	8.00e-179	619.00
IUUC-Gac-041645	Gasterosteus aculeatus	82.37	3.00e-168	583.00
IUUC-Gma-044329	Glycine max	61.49	7.00e-122	430.00
IUUC-Ggo-044800	Gorilla gorilla	82.95	8.00e-154	536.00
IUUC-Hsa-045918	Homo sapiens	93.07	0.00e+00	640.00
IUUC-Hvu-047342	Hordeum vulgare	58.39	3.00e-118	418.00
IUUC-Itr-048047	Ictidomys tridecemlineatus	89.19	1.00e-107	381.00
IUUC-Kpa-049149	Komagataella pastoris	34.30	2.00e-36	146.00
IUUC-Lch-050395	Latimeria chalumnae	87.02	0.00e+00	649.00
IUUC-Lpe-051275	Leersia perrieri	59.03	3.00e-119	421.00
IUUC-Loc-052666	Lepisosteus oculatus	84.66	3.00e-171	593.00
IUUC-Lma-053129	Leptosphaeria maculans	45.54	2.00e-86	312.00
IUUC-Laf-054512	Loxodonta africana	92.24	0.00e+00	633.00
IUUC-Mcc-055819	Macaca mulatta	93.07	0.00e+00	639.00
IUUC-Meu-056350	Macropus eugenii	90.86	5.00e-164	570.00
IUUC-Mor-057063	Magnaporthe oryzae	48.57	4.00e-91	327.00
IUUC-Mpo-057369	Magnaporthe poae	46.67	5.00e-83	301.00
IUUC-Mtr-058228	Medicago truncatula	60.52	2.00e-121	429.00
IUUC-Mla-059093	Melampsora laricipopulina	43.26	1.00e-68	253.00
IUUC-Mga-059719	Meleagris gallopavo	96.82	7.00e-177	612.00
IUUC-Mvi-060285	Microbotryum violaceum	39.69	4.00e-62	231.00
IUUC-Mmr-061685	Microcebus murinus	87.81	9.00e-166	575.00
IUUC-Mmu-063216	Mus musculus	94.46	0.00e+00	654.00
IUUC-Mac-065463	Musa acuminata	55.81	5.00e-109	387.00
IUUC-Mpu-066390	Mustela putorius furo	93.63	0.00e+00	650.00
IUUC-Mlu-066932	Myotis lucifugus	91.30	2.00e-175	608.00
IUUC-Nfi-068509	Neosartorya fischeri	49.36	1.00e-92	333.00
IUUC-Ncr-068870	Neurospora crassa	48.54	5.00e-92	330.00
IUUC-Nle-069539	Nomascus leucogenys	93.07	0.00e+00	639.00
IUUC-Opr-070555	Ochotona princeps	80.06	1.00e-162	565.00
IUUC-Ont-071490	Oreochromis niloticus	81.04	1.00e-167	582.00
IUUC-Oan-073044	Ornithorhynchus anatinus	81.04	7.00e-157	546.00
IUUC-Ocu-073764	Oryctolagus cuniculus	93.35	0.00e+00	651.00
IUUC-Oba-075704	Oryza barthii	59.03	4.00e-119	420.00
IUUC-Obr-076455	Oryza brachyantha	59.35	7.00e-119	420.00
IUUC-Ogl-077382	Oryza glaberrima	59.35	3.00e-119	421.00
IUUC-Ogu-078739	Oryza glumaepatula	59.03	3.00e-119	421.00
IUUC-Oin-079072	Oryza indica	59.03	3.00e-119	421.00
IUUC-Olo-080809	Oryza longistaminata	59.03	3.00e-119	421.00
IUUC-Ome-081677	Oryza meridionalis	59.03	8.00e-119	419.00
IUUC-Oni-082937	Oryza nivara	59.03	3.00e-119	421.00
IUUC-Opu-083510	Oryza punctata	59.03	3.00e-119	421.00
IUUC-Oru-084360	Oryza rufipogon	59.03	5.00e-119	421.00
IUUC-Osa-085640	Oryza sativa	59.03	5.00e-119	420.00
IUUC-Ola-086504	Oryzias latipes	81.54	3.00e-168	584.00
IUUC-Olu-087869	Ostreococcus lucimarinus	41.31	5.00e-63	234.00
IUUC-Oga-088773	Otolemur garnettii	93.63	0.00e+00	639.00
IUUC-Oar-089677	Ovis aries	91.21	0.00e+00	630.00
IUUC-Ptr-090724	Pan troglodytes	92.77	7.00e-176	609.00
IUUC-Pan-092683	Papio anubis	93.07	0.00e+00	640.00
IUUC-Psi-093415	Pelodiscus sinensis	98.05	1.00e-174	605.00
IUUC-Pma-094562	Petromyzon marinus	74.86	1.00e-164	572.00
IUUC-Pno-095014	Phaeosphaeria nodorum	48.49	6.00e-87	314.00
IUUC-Ppa-095822	Physcomitrella patens	62.14	8.00e-121	426.00
IUUC-Pfo-096579	Poecilia formosa	81.82	2.00e-167	581.00
IUUC-Pab-098313	Pongo abelii	93.07	0.00e+00	640.00
IUUC-Pop-099747	Populus trichocarpa	61.81	6.00e-123	433.00
IUUC-Pca-100871	Procavia capensis	84.29	2.00e-129	454.00
IUUC-Ppe-101389	Prunus persica	62.46	1.00e-123	436.00
IUUC-Pva-102468	Pteropus vampyrus	78.12	8.00e-145	506.00
IUUC-Pgr-103523	Puccinia graminis	42.01	4.00e-72	265.00
IUUC-Ptt-103930	Puccinia triticina	41.69	7.00e-72	264.00
IUUC-Pte-104299	Pyrenophora teres	48.73	1.00e-92	332.00
IUUC-Pyt-104564	Pyrenophora triticirepentis	49.36	1.00e-92	333.00
IUUC-Rno-105796	Rattus norvegicus	93.07	0.00e+00	644.00
IUUC-Sha-107191	Sarcophilus harrisii	99.72	0.00e+00	650.00
IUUC-Sja-107952	Schizosaccharomyces japonicus	38.26	4.00e-63	234.00
IUUC-Spo-108249	Schizosaccharomyces pombe	44.44	6.00e-80	290.00
IUUC-Ssl-108448	Sclerotinia sclerotiorum	50.16	3.00e-93	335.00
IUUC-Sit-110805	Setaria italica	58.06	5.00e-118	417.00
IUUC-Sly-111567	Solanum lycopersicum	62.78	6.00e-125	439.00
IUUC-Stu-112562	Solanum tuberosum	62.78	1.00e-125	442.00
IUUC-Sar-112991	Sorex araneus	96.35	3.00e-119	420.00
IUUC-Sbi-114010	Sorghum bicolor	58.06	5.00e-118	417.00
IUUC-Sre-114947	Sporisorium reilianum	42.99	2.00e-73	269.00
IUUC-Ssc-115371	Sus scrofa	91.97	0.00e+00	635.00
IUUC-Tgu-117429	Taeniopygia guttata	94.46	3.00e-173	600.00
IUUC-Tru-118081	Takifugu rubripes	82.37	7.00e-169	586.00
IUUC-Tsy-119101	Tarsius syrichta	81.44	5.00e-155	540.00
IUUC-Tni-120532	Tetraodon nigroviridis	82.37	4.00e-168	583.00
IUUC-Tca-121373	Theobroma cacao	62.46	2.00e-124	438.00
IUUC-Tre-122050	Trichoderma reesei	46.28	4.00e-90	324.00
IUUC-Tvi-122394	Trichoderma virens	45.48	2.00e-84	305.00
IUUC-Tae-124661	Triticum aestivum	58.52	6.00e-118	417.00
IUUC-Tme-126998	Tuber melanosporum	51.46	3.00e-93	335.00
IUUC-Tbe-128032	Tupaia belangeri	93.91	0.00e+00	641.00
IUUC-Ttr-129102	Tursiops truncatus	82.27	2.00e-156	545.00
IUUC-Uma-129363	Ustilago maydis	43.61	9.00e-77	280.00
IUUC-Vda-129891	Verticillium dahliae	50.16	8.00e-93	333.00
IUUC-Vpa-130827	Vicugna pacos	91.14	0.00e+00	632.00
IUUC-Vvi-131202	Vitis vinifera	61.17	9.00e-123	432.00
IUUC-Xtr-132769	Xenopus tropicalis	83.75	7.00e-168	583.00
IUUC-Xma-133147	Xiphophorus maculatus	81.82	4.00e-167	580.00
IUUC-Yli-134352	Yarrowia lipolytica	33.78	6.00e-35	140.00
IUUC-Zma-135294	Zea mays	58.06	7.00e-118	416.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence