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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-006587
UUCD1 version UUC-ArT-00529
Ensembl Protein ID AT5G25150.1
UniProt Accession Q6S7B0; TAF5_ARATH
Genbank Protein ID AAR28022.1; AED93406.1
Protein Name Transcription initiation factor TFIID subunit 5; TBP-associated factor 5
Genbank Nucleotide ID AY463620; AC006259
Gene Name TAF5; At5g25150; F21J6
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G25150 AT5G25150.2 AT5G25150.2
AT5G25150 AT5G25150.1 AT5G25150.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexPINAHINTMentha
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.70e-42 140.3 500 538
UBD/Beta-Prp 3.30e-67 227.7 350 659
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH ++v c+++ ++ +++++Gs D+t+++WD+ tg +++
   Q: 500  GHLSDVDCVQWhPNcNYIATGSSDKTVRLWDVQTGECVR 538
           8***********888*********************986 PP
   

   UBD/Beta-Prp
   S: 6    kghhksvitcvkfspdksllatgsrdgtikvwdvttgkl........................lrslsgheaevtavkfspdgkilvtgseDrtikvw 79
           ++h+   ++c  +s d+sl+a g+ d++ikvwd+ +                              l gh+++v++ +fsp g++ +++s D ti++w
   Q: 350  NTHNG--LNCSSISHDGSLVAGGFSDSSIKVWDMAKIGQagsgalqaendssdqsigpngrrsYTLLLGHSGPVYSATFSPPGDFVLSSSADTTIRLW 445
           44554..56677788*******************997778**********************55556******************************* PP
   S: 80   dlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltg 177
           + + +  ++ +kgh++ v++ +fsp g++++s shdrt+r+w ++  q l+ + +gh + v cv++hp++n++++Gs D+tvrlWd++tg+++r + g
   Q: 446  STKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLR-IMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIG 542
           ***************************************************.*********************************************9 PP
   S: 178  ghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn........... 264
            h ++v sl+++++g++++sg++dgt+ +wdl+t +c+  l gh++ v+s+  s ++ +l+sgs+D ++++Wd++s++ l++ + +n           
   Q: 543  -HRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSSTKLTKAEEKNgnsnrlrslrt 639
           .**********************************************************************************999999999999999 PP
   S: 265  ..ssvisvavlsfgdnvlvl 282
             +++++v +l+f++++l+ 
   Q: 640  fpTKSTPVHALRFSRRNLLF 659
           99999999999999777654 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.
 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.
Protein Sequence
(Fasta)
MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ 60
EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC YMDLVGKGHT QEARAFFNSF 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-006587|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGTTTCAGCG ACGAGATACA AGTTTCTAGG AGAGGAAATT GAATCGAGAG AGAGAGAGAG 60
AGACAACAAT GGATCCAGAG CAAATCAACG AGTTCGTCGT GGGCTACTTG AAGAAGAAAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-006587|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0010--Activator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR007582--TFIID_NTD2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04494--TFIID_NTD2
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005634--C:nucleus
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated
KEGG ath:AT5G25150
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000851 Aegilops tauschii 64.77 1.00e-178 618.00
IUUC-Aml-001607 Ailuropoda melanoleuca 47.19 5.00e-95 341.00
IUUC-Atr-003136 Amborella trichopoda 69.55 0.00e+00 922.00
IUUC-Apl-004193 Anas platyrhynchos 47.28 2.00e-93 336.00
IUUC-Aca-004522 Anolis carolinensis 36.57 2.00e-116 412.00
IUUC-Aly-006476 Arabidopsis lyrata 95.21 0.00e+00 1271.00
IUUC-Ago-007736 Ashbya gossypii 33.81 4.00e-107 381.00
IUUC-Acl-008092 Aspergillus clavatus 41.35 2.00e-75 276.00
IUUC-Afl-008659 Aspergillus flavus 40.33 4.00e-75 275.00
IUUC-Afu-008902 Aspergillus fumigatus 41.08 2.00e-75 276.00
IUUC-Ani-009462 Aspergillus nidulans 41.29 1.00e-75 276.00
IUUC-Aor-010083 Aspergillus oryzae 40.33 3.00e-75 275.00
IUUC-Ate-010271 Aspergillus terreus 39.65 5.00e-75 275.00
IUUC-Ame-010721 Astyanax mexicanus 46.33 2.00e-93 336.00
IUUC-Bgr-012257 Blumeria graminis 30.20 2.00e-84 306.00
IUUC-Bta-013539 Bos taurus 46.63 4.00e-95 342.00
IUUC-Bci-013737 Botrytis cinerea 30.15 7.00e-83 301.00
IUUC-Bdi-015041 Brachypodium distachyon 67.32 0.00e+00 794.00
IUUC-Bol-015483 Brassica oleracea 92.38 0.00e+00 1237.00
IUUC-Bra-017147 Brassica rapa 92.68 0.00e+00 1239.00
IUUC-Cel-018451 Caenorhabditis elegans 27.85 1.00e-60 227.00
IUUC-Cja-018881 Callithrix jacchus 47.19 9.00e-95 340.00
IUUC-Cfa-020056 Canis familiaris 47.19 5.00e-95 341.00
IUUC-Cpo-021454 Cavia porcellus 37.54 3.00e-119 422.00
IUUC-Cre-022736 Chlamydomonas reinhardtii 39.30 6.00e-63 234.00
IUUC-Csa-023045 Chlorocebus sabaeus 47.19 9.00e-95 340.00
IUUC-Cho-024284 Choloepus hoffmanni 45.48 8.00e-78 284.00
IUUC-Cin-025457 Ciona intestinalis 51.34 1.00e-74 272.00
IUUC-Csv-025882 Ciona savignyi 43.13 1.00e-78 286.00
IUUC-Cgl-026392 Colletotrichum gloeosporioides 28.10 7.00e-75 274.00
IUUC-Cne-026876 Cryptococcus neoformans 31.44 6.00e-80 291.00
IUUC-Cme-027302 Cyanidioschyzon merolae 36.90 8.00e-116 410.00
IUUC-Dre-027980 Danio rerio 47.85 3.00e-94 338.00
IUUC-Dno-028863 Dasypus novemcinctus 47.19 8.00e-95 340.00
IUUC-Dor-030561 Dipodomys ordii 47.19 5.00e-95 341.00
IUUC-Dse-031547 Dothistroma septosporum 31.54 2.00e-87 316.00
IUUC-Dme-031917 Drosophila melanogaster 44.00 1.00e-82 300.00
IUUC-Ete-032712 Echinops telfairi 41.53 1.00e-72 266.00
IUUC-Eca-033927 Equus caballus 47.19 9.00e-95 340.00
IUUC-Eeu-034449 Erinaceus europaeus 48.00 1.00e-87 317.00
IUUC-Fca-036325 Felis catus 47.19 5.00e-95 341.00
IUUC-Fal-036604 Ficedula albicollis 46.50 9.00e-93 333.00
IUUC-Fox-038049 Fusarium oxysporum 32.54 2.00e-50 193.00
IUUC-Fso-038302 Fusarium solani 38.64 4.00e-52 199.00
IUUC-Gmo-038832 Gadus morhua 44.19 1.00e-90 327.00
IUUC-Ggr-039878 Gaeumannomyces graminis 28.98 2.00e-73 270.00
IUUC-Gga-041147 Gallus gallus 46.48 8.00e-94 337.00
IUUC-Gac-041373 Gasterosteus aculeatus 46.05 2.00e-91 329.00
IUUC-Gma-043230 Glycine max 72.71 0.00e+00 971.00
IUUC-Ggo-044568 Gorilla gorilla 40.33 5.00e-73 268.00
IUUC-Hsa-045971 Homo sapiens 47.19 6.00e-95 341.00
IUUC-Hvu-047695 Hordeum vulgare 68.51 1.00e-179 621.00
IUUC-Itr-048400 Ictidomys tridecemlineatus 47.19 1.00e-94 340.00
IUUC-Kpa-049402 Komagataella pastoris 35.22 1.00e-114 406.00
IUUC-Lch-049526 Latimeria chalumnae 44.09 2.00e-84 305.00
IUUC-Lpe-051560 Leersia perrieri 63.90 0.00e+00 803.00
IUUC-Loc-052882 Lepisosteus oculatus 46.89 2.00e-91 330.00
IUUC-Lma-053212 Leptosphaeria maculans 39.04 3.00e-64 239.00
IUUC-Laf-053859 Loxodonta africana 47.19 1.00e-94 340.00
IUUC-Mcc-054957 Macaca mulatta 47.19 2.00e-94 338.00
IUUC-Meu-056182 Macropus eugenii 41.00 2.00e-70 259.00
IUUC-Mor-057024 Magnaporthe oryzae 28.68 2.00e-69 256.00
IUUC-Mpo-057520 Magnaporthe poae 29.77 2.00e-71 262.00
IUUC-Mtr-058754 Medicago truncatula 73.07 0.00e+00 1021.00
IUUC-Mla-058881 Melampsora laricipopulina 39.79 1.00e-75 277.00
IUUC-Mga-059776 Meleagris gallopavo 37.29 2.00e-117 415.00
IUUC-Mvi-060208 Microbotryum violaceum 34.06 6.00e-93 334.00
IUUC-Mmr-061783 Microcebus murinus 47.19 2.00e-94 338.00
IUUC-Mdo-062856 Monodelphis domestica 46.48 2.00e-94 339.00
IUUC-Mmu-064218 Mus musculus 47.19 7.00e-95 341.00
IUUC-Mac-064886 Musa acuminata 60.97 4.00e-123 435.00
IUUC-Mpu-065735 Mustela putorius furo 47.19 4.00e-95 342.00
IUUC-Mlu-067544 Myotis lucifugus 47.06 1.00e-93 336.00
IUUC-Nfi-068502 Neosartorya fischeri 41.08 2.00e-76 280.00
IUUC-Ncr-068891 Neurospora crassa 28.93 2.00e-71 263.00
IUUC-Nle-069389 Nomascus leucogenys 47.19 5.00e-95 341.00
IUUC-Opr-071042 Ochotona princeps 42.98 2.00e-81 296.00
IUUC-Ont-071455 Oreochromis niloticus 46.91 6.00e-95 341.00
IUUC-Oan-073181 Ornithorhynchus anatinus 46.48 1.00e-94 339.00
IUUC-Ocu-073758 Oryctolagus cuniculus 47.19 6.00e-95 341.00
IUUC-Oba-075739 Oryza barthii 61.80 0.00e+00 734.00
IUUC-Obr-076111 Oryza brachyantha 68.31 0.00e+00 876.00
IUUC-Ogl-077914 Oryza glaberrima 65.08 0.00e+00 812.00
IUUC-Ogu-078057 Oryza glumaepatula 58.21 0.00e+00 680.00
IUUC-Oin-079473 Oryza indica 66.26 0.00e+00 822.00
IUUC-Olo-080557 Oryza longistaminata 57.03 0.00e+00 655.00
IUUC-Ome-081831 Oryza meridionalis 58.30 0.00e+00 679.00
IUUC-Oni-082431 Oryza nivara 60.77 0.00e+00 785.00
IUUC-Opu-083239 Oryza punctata 58.01 0.00e+00 681.00
IUUC-Oru-085131 Oryza rufipogon 59.42 0.00e+00 692.00
IUUC-Osa-086189 Oryza sativa 66.26 0.00e+00 821.00
IUUC-Ola-086574 Oryzias latipes 47.41 3.00e-93 335.00
IUUC-Olu-087616 Ostreococcus lucimarinus 39.00 7.00e-127 447.00
IUUC-Oga-088827 Otolemur garnettii 47.19 5.00e-95 341.00
IUUC-Oar-089648 Ovis aries 46.63 3.00e-95 342.00
IUUC-Ptr-091195 Pan troglodytes 47.19 7.00e-95 341.00
IUUC-Pan-091978 Papio anubis 47.19 6.00e-95 341.00
IUUC-Psi-093598 Pelodiscus sinensis 36.92 5.00e-103 367.00
IUUC-Pma-094593 Petromyzon marinus 39.13 1.00e-57 217.00
IUUC-Pno-094823 Phaeosphaeria nodorum 33.33 4.00e-83 301.00
IUUC-Ppa-095455 Physcomitrella patens 55.70 0.00e+00 745.00
IUUC-Pfo-097120 Poecilia formosa 48.28 5.00e-95 341.00
IUUC-Pab-098771 Pongo abelii 47.19 6.00e-95 341.00
IUUC-Pop-099542 Populus trichocarpa 75.04 0.00e+00 1019.00
IUUC-Pca-100727 Procavia capensis 41.53 8.00e-73 267.00
IUUC-Ppe-101686 Prunus persica 75.86 0.00e+00 1018.00
IUUC-Pva-103211 Pteropus vampyrus 42.25 4.00e-74 271.00
IUUC-Pgr-103603 Puccinia graminis 31.68 2.00e-87 316.00
IUUC-Ptt-103995 Puccinia triticina 31.60 2.00e-70 260.00
IUUC-Pte-104359 Pyrenophora teres 31.42 8.00e-85 307.00
IUUC-Pyt-104523 Pyrenophora triticirepentis 31.09 3.00e-83 302.00
IUUC-Rno-105064 Rattus norvegicus 47.19 1.00e-94 340.00
IUUC-Sce-106186 Saccharomyces cerevisiae 34.30 4.00e-102 365.00
IUUC-Sha-106582 Sarcophilus harrisii 37.13 3.00e-117 415.00
IUUC-Sja-107683 Schizosaccharomyces japonicus 35.58 4.00e-111 394.00
IUUC-Spo-108142 Schizosaccharomyces pombe 34.90 4.00e-113 401.00
IUUC-Ssl-108456 Sclerotinia sclerotiorum 37.32 1.00e-68 253.00
IUUC-Smo-109097 Selaginella moellendorffii 58.50 0.00e+00 724.00
IUUC-Sit-109804 Setaria italica 67.56 0.00e+00 863.00
IUUC-Sly-111693 Solanum lycopersicum 72.42 0.00e+00 953.00
IUUC-Sar-113381 Sorex araneus 41.55 6.00e-76 277.00
IUUC-Sbi-114849 Sorghum bicolor 67.78 0.00e+00 853.00
IUUC-Sre-114945 Sporisorium reilianum 37.99 1.00e-73 271.00
IUUC-Ssc-115582 Sus scrofa 47.54 1.00e-93 336.00
IUUC-Tgu-116899 Taeniopygia guttata 46.20 2.00e-93 336.00
IUUC-Tru-118011 Takifugu rubripes 46.33 1.00e-91 330.00
IUUC-Tsy-119622 Tarsius syrichta 32.43 2.00e-47 182.00
IUUC-Tni-120598 Tetraodon nigroviridis 46.05 1.00e-91 330.00
IUUC-Tca-121247 Theobroma cacao 78.39 0.00e+00 1065.00
IUUC-Tre-121949 Trichoderma reesei 35.81 5.00e-62 231.00
IUUC-Tvi-122626 Trichoderma virens 34.05 2.00e-58 219.00
IUUC-Tae-125816 Triticum aestivum 69.67 0.00e+00 790.00
IUUC-Tur-126005 Triticum urartu 61.02 0.00e+00 724.00
IUUC-Tme-126904 Tuber melanosporum 33.85 1.00e-109 390.00
IUUC-Tbe-127254 Tupaia belangeri 40.17 6.00e-73 268.00
IUUC-Ttr-128544 Tursiops truncatus 47.19 4.00e-95 342.00
IUUC-Uma-129379 Ustilago maydis 44.30 1.00e-71 264.00
IUUC-Vda-129761 Verticillium dahliae 33.16 7.00e-55 208.00
IUUC-Vpa-130485 Vicugna pacos 47.19 5.00e-95 341.00
IUUC-Vvi-131171 Vitis vinifera 75.82 0.00e+00 1006.00
IUUC-Xtr-132762 Xenopus tropicalis 39.44 1.00e-72 267.00
IUUC-Xma-133583 Xiphophorus maculatus 47.99 8.00e-94 337.00
IUUC-Yli-134446 Yarrowia lipolytica 39.56 1.00e-125 443.00
IUUC-Zma-135722 Zea mays 66.47 0.00e+00 846.00
Created Date 25-Jun-2017

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