iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007109

Ensembl Protein ID

AT4G01860.1

UniProt Accession

Q8RXC4; Q8RXC4_ARATH

Genbank Protein ID

AAL91237.1; AAP78935.1; AEE82086.1; AEE82087.1

Protein Name

At4g01860; Putative uncharacterized protein At4g01860; Transducin family protein / WD-40 repeat family protein

Genbank Nucleotide ID

AY081348; BT009667; CP002687; CP002687

Gene Name

At4g01860; T7B11.12; T7B11_12

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G01860	AT4G01860.1	AT4G01860.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-21	75.5	233	268

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH++s++ + +  d   +vs sdD + ++W+++++ 
   Q: 233  GHEGSIFRIVWsLDgSKIVSVSDDRSARIWEIDSQE 268
           8***********66599**************88765 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAEENSRRKW NPHAGPYLGE VSSLAFLNLP QHVSSIPYLL AGSGSEILLY DLSSGELIRS 60
FQVFEGVRVH GTVCSKSFVH SAERYTYKLV IFGEKKVKIF SLIVELASSS GEISVNLENF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAAGTTTTG TGTTGCCTCT AAACTTTGAA CTCAAGTCGG AGTCGGAGCC GCACTGTCGT 60
AGCAAAGCTA TGGCGGAAGA AAACAGCCGC CGGAAGTGGA ACCCTCACGC CGGTCCATAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex

KEGG

ath:AT4G01860

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000976	Aegilops tauschii	42.61	0.00e+00	728.00
IUUC-Aml-001786	Ailuropoda melanoleuca	23.35	7.00e-36	145.00
IUUC-Atr-003053	Amborella trichopoda	45.21	0.00e+00	1151.00
IUUC-Aca-004886	Anolis carolinensis	23.96	3.00e-37	150.00
IUUC-Aly-005509	Arabidopsis lyrata	92.15	0.00e+00	2423.00
IUUC-Ago-007817	Ashbya gossypii	29.50	1.00e-27	117.00
IUUC-Acl-008020	Aspergillus clavatus	22.63	4.00e-13	70.10
IUUC-Afu-009035	Aspergillus fumigatus	22.08	2.00e-26	114.00
IUUC-Ani-009359	Aspergillus nidulans	24.56	6.00e-18	86.30
IUUC-Ang-009692	Aspergillus niger	25.21	5.00e-17	83.20
IUUC-Aor-010056	Aspergillus oryzae	20.19	1.00e-16	82.00
IUUC-Ate-010299	Aspergillus terreus	20.49	1.00e-12	68.60
IUUC-Ame-011051	Astyanax mexicanus	26.14	2.00e-16	81.30
IUUC-Bgr-012077	Blumeria graminis	21.89	4.00e-20	93.20
IUUC-Bta-012793	Bos taurus	24.04	4.00e-38	153.00
IUUC-Bci-013679	Botrytis cinerea	22.71	1.00e-16	82.00
IUUC-Bdi-014401	Brachypodium distachyon	44.51	0.00e+00	1027.00
IUUC-Bol-015628	Brassica oleracea	84.12	0.00e+00	1871.00
IUUC-Bra-017446	Brassica rapa	83.02	0.00e+00	2103.00
IUUC-Cja-018910	Callithrix jacchus	23.61	6.00e-38	152.00
IUUC-Cfa-021260	Canis familiaris	23.49	1.00e-36	148.00
IUUC-Cpo-022205	Cavia porcellus	23.42	2.00e-35	144.00
IUUC-Csa-023510	Chlorocebus sabaeus	23.09	4.00e-38	152.00
IUUC-Dre-028004	Danio rerio	22.19	2.00e-25	110.00
IUUC-Dno-029804	Dasypus novemcinctus	22.06	9.00e-35	142.00
IUUC-Dor-030512	Dipodomys ordii	21.47	8.00e-28	119.00
IUUC-Dme-032047	Drosophila melanogaster	22.47	4.00e-19	89.70
IUUC-Ete-033076	Echinops telfairi	27.30	2.00e-27	117.00
IUUC-Eca-033727	Equus caballus	22.73	2.00e-22	100.00
IUUC-Eeu-035210	Erinaceus europaeus	23.88	2.00e-38	154.00
IUUC-Fca-035433	Felis catus	24.16	4.00e-39	156.00
IUUC-Fox-037749	Fusarium oxysporum	24.84	3.00e-16	80.50
IUUC-Fso-038164	Fusarium solani	23.70	9.00e-27	115.00
IUUC-Gmo-039180	Gadus morhua	23.52	3.00e-29	123.00
IUUC-Gga-040482	Gallus gallus	26.89	3.00e-09	57.40
IUUC-Gac-042066	Gasterosteus aculeatus	21.46	5.00e-27	115.00
IUUC-Gma-042704	Glycine max	50.25	0.00e+00	1278.00
IUUC-Ggo-044942	Gorilla gorilla	22.83	2.00e-37	151.00
IUUC-Hsa-046408	Homo sapiens	22.83	3.00e-37	150.00
IUUC-Hvu-047448	Hordeum vulgare	44.86	0.00e+00	960.00
IUUC-Itr-048756	Ictidomys tridecemlineatus	22.88	5.00e-38	152.00
IUUC-Kpa-049257	Komagataella pastoris	23.09	1.00e-27	117.00
IUUC-Lch-050170	Latimeria chalumnae	23.62	6.00e-46	179.00
IUUC-Lpe-051575	Leersia perrieri	41.39	0.00e+00	964.00
IUUC-Loc-052341	Lepisosteus oculatus	25.60	3.00e-16	80.90
IUUC-Lma-053318	Leptosphaeria maculans	22.00	5.00e-25	109.00
IUUC-Laf-054299	Loxodonta africana	22.66	4.00e-34	139.00
IUUC-Mcc-055438	Macaca mulatta	23.46	2.00e-38	154.00
IUUC-Meu-056206	Macropus eugenii	26.54	2.00e-22	100.00
IUUC-Mor-056928	Magnaporthe oryzae	22.07	5.00e-14	73.20
IUUC-Mpo-057438	Magnaporthe poae	27.34	4.00e-11	63.50
IUUC-Mtr-058455	Medicago truncatula	49.78	0.00e+00	1250.00
IUUC-Mvi-060438	Microbotryum violaceum	26.05	3.00e-20	94.00
IUUC-Mmr-061353	Microcebus murinus	23.02	2.00e-36	147.00
IUUC-Mdo-062061	Monodelphis domestica	27.33	2.00e-28	120.00
IUUC-Mmu-064386	Mus musculus	23.47	1.00e-32	135.00
IUUC-Mac-065653	Musa acuminata	46.79	0.00e+00	1155.00
IUUC-Mpu-066420	Mustela putorius furo	23.59	3.00e-36	147.00
IUUC-Mlu-068104	Myotis lucifugus	22.52	2.00e-35	144.00
IUUC-Nfi-068301	Neosartorya fischeri	22.41	7.00e-28	119.00
IUUC-Ncr-068718	Neurospora crassa	38.24	5.00e-11	63.20
IUUC-Nle-069836	Nomascus leucogenys	22.86	1.00e-36	148.00
IUUC-Ont-071605	Oreochromis niloticus	23.34	9.00e-38	152.00
IUUC-Oan-073645	Ornithorhynchus anatinus	24.97	1.00e-45	177.00
IUUC-Ocu-074708	Oryctolagus cuniculus	22.62	8.00e-34	139.00
IUUC-Oba-075290	Oryza barthii	43.05	0.00e+00	977.00
IUUC-Obr-076647	Oryza brachyantha	42.91	0.00e+00	984.00
IUUC-Ogl-077628	Oryza glaberrima	43.30	0.00e+00	1011.00
IUUC-Ogu-078209	Oryza glumaepatula	42.48	0.00e+00	941.00
IUUC-Oin-079342	Oryza indica	43.64	0.00e+00	1021.00
IUUC-Olo-080334	Oryza longistaminata	41.65	0.00e+00	872.00
IUUC-Ome-081776	Oryza meridionalis	39.03	0.00e+00	829.00
IUUC-Oni-082311	Oryza nivara	43.64	0.00e+00	1021.00
IUUC-Opu-083195	Oryza punctata	41.41	0.00e+00	925.00
IUUC-Oru-085006	Oryza rufipogon	42.85	0.00e+00	976.00
IUUC-Osa-085317	Oryza sativa	43.10	0.00e+00	1011.00
IUUC-Ola-087145	Oryzias latipes	22.98	2.00e-31	130.00
IUUC-Olu-087785	Ostreococcus lucimarinus	25.09	8.00e-43	168.00
IUUC-Oga-088206	Otolemur garnettii	23.20	3.00e-37	150.00
IUUC-Oar-089802	Ovis aries	23.93	2.00e-37	150.00
IUUC-Ptr-091528	Pan troglodytes	22.12	9.00e-30	125.00
IUUC-Pan-092782	Papio anubis	22.83	6.00e-37	149.00
IUUC-Psi-093102	Pelodiscus sinensis	30.65	3.00e-31	129.00
IUUC-Pno-095063	Phaeosphaeria nodorum	24.26	2.00e-12	67.80
IUUC-Ppa-095436	Physcomitrella patens	36.57	0.00e+00	757.00
IUUC-Pfo-097423	Poecilia formosa	21.47	3.00e-32	133.00
IUUC-Pab-097763	Pongo abelii	22.83	2.00e-37	150.00
IUUC-Pop-099090	Populus trichocarpa	51.23	0.00e+00	1373.00
IUUC-Pca-100173	Procavia capensis	22.82	2.00e-33	137.00
IUUC-Ppe-101580	Prunus persica	52.15	0.00e+00	1366.00
IUUC-Pva-102715	Pteropus vampyrus	25.62	1.00e-27	118.00
IUUC-Pgr-103424	Puccinia graminis	25.20	1.00e-12	68.60
IUUC-Pte-104316	Pyrenophora teres	24.78	1.00e-16	81.60
IUUC-Pyt-104676	Pyrenophora triticirepentis	23.82	1.00e-15	79.00
IUUC-Rno-105122	Rattus norvegicus	23.12	8.00e-37	148.00
IUUC-Sce-106465	Saccharomyces cerevisiae	26.98	6.00e-22	99.40
IUUC-Sha-107208	Sarcophilus harrisii	26.35	1.00e-24	108.00
IUUC-Sja-107771	Schizosaccharomyces japonicus	30.48	9.00e-19	88.60
IUUC-Spo-108272	Schizosaccharomyces pombe	25.47	4.00e-20	93.20
IUUC-Smo-108961	Selaginella moellendorffii	31.49	1.00e-160	560.00
IUUC-Sit-109932	Setaria italica	43.52	0.00e+00	1016.00
IUUC-Sly-111685	Solanum lycopersicum	49.60	0.00e+00	1285.00
IUUC-Sar-112998	Sorex araneus	23.74	2.00e-37	150.00
IUUC-Sbi-114074	Sorghum bicolor	44.41	0.00e+00	1007.00
IUUC-Ssc-115619	Sus scrofa	26.63	2.00e-28	121.00
IUUC-Tru-118104	Takifugu rubripes	22.37	4.00e-33	136.00
IUUC-Tni-119995	Tetraodon nigroviridis	22.66	7.00e-38	152.00
IUUC-Tca-121790	Theobroma cacao	54.33	0.00e+00	1421.00
IUUC-Tae-125371	Triticum aestivum	44.63	0.00e+00	1065.00
IUUC-Tur-126787	Triticum urartu	44.66	0.00e+00	1025.00
IUUC-Tme-126957	Tuber melanosporum	28.27	1.00e-09	57.80
IUUC-Tbe-128082	Tupaia belangeri	30.95	1.00e-14	75.10
IUUC-Ttr-128387	Tursiops truncatus	26.90	6.00e-29	122.00
IUUC-Vda-129804	Verticillium dahliae	20.34	2.00e-08	54.70
IUUC-Vvi-131701	Vitis vinifera	52.94	0.00e+00	1379.00
IUUC-Xtr-132622	Xenopus tropicalis	25.64	4.00e-46	179.00
IUUC-Xma-134014	Xiphophorus maculatus	22.69	6.00e-35	142.00
IUUC-Yli-134589	Yarrowia lipolytica	25.46	5.00e-14	72.80
IUUC-Zma-135732	Zea mays	43.79	0.00e+00	1029.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence