iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_031292	EOY12760	EOY12760
TCM_031292	EOY12762	EOY12762
TCM_031292	EOY12761	EOY12761
TCM_031292	EOY12763	EOY12763

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.20e-52	180.1	313	809
UBD/Alpha-Helix/UBA	7.80e-14	52.2	622	662

Active Site

Position(s)	Description	Evidence
322	Nucleophile	{ECO:0000256\|PIRSR:PIRSR016308-1}
772	Proton acceptor	{ECO:0000256\|PIRSR:PIRSR016308-1}

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeel....................wkskkkavsprellkalkke 80
           tGl NlgN+CYm +++Q++++++++ +++   +  +   e++p +p+ +l ++l+kl + l                    ++ k++ + pr++++++++ 
   Q: 313  TGLVNLGNSCYMAATMQVMFSTHSFCRQYYMnQSLKMAFETAPADPTVDLNMQLTKLGHGLlsgkysvpasekdgttapaiTDAKQEGIPPRMFKAVIAAS 413
           7************************66555515555556778899****************88888888888888777665588888************** PP
   S: 81   aeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkee 181
           ++efs+++qqDa Ef+ ++ldq+e++                              k +   s+ F++ ++++i c + +  +  +   + lsl++p +e 
   Q: 414  HPEFSTMRQQDALEFFLHFLDQVERSN---------------------------AVKPELDPSRSFKFGVEERILCSSGKVAY-NKRLDYILSLNIPLHEV 486
           ************************988...........................45666678999***********7766655.44555667777777776 PP
   S: 182  tkke.............................slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkv 253
           t+ke                              l+ cL+sf+++ee+ +   +y++  k+k++a k+ +l+++P++L+lh+ +f + e++++++k++ ++
   Q: 487  TNKEeleafhkikaekisegkdvssdeivrprvPLEACLASFAAPEEIPE---FYSTALKAKTTAIKTAGLTSFPDYLVLHMRKF-VMEAGWVPKKLDVYI 583
           6666789*****************************************96...********************************.77889********** PP
   S: 254  efpleLdlspfcts......................................................................................p 268
           ++p+ +d+s++ ++                                                                                      +
   Q: 584  DVPDIIDISHMRSKglqpgeellpesapgseaessqpvaneeivaqlvsmgfnqlhcqkaaintlntgveeamnwllshmddpdidapichgaqgagasvD 684
           *********99999999999999988888887777777777777777777777666666666666666666666666666666666666665555555550 PP
   S: 269  eekqke..................................................................kkkYeLiavvvHsG.slssGHYvayvkne 302
                +                                                                    +Y+L+++v+H G s+++GHYva++ + 
   Q: 685  -----QskvdtlisfgfqeeiarmalnasggdiekatdwifnnpnasassdmdtttssssvptpvdaglpdgGGRYRLFGIVSHIGtSTQCGHYVAHILK- 779
           .....05555555555555666666666666666666666666666666777777888888999999999999***************************. PP
   S: 303  kgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
           +g+W+ f+D+kV ++   +  +   + +Y++f++r
   Q: 780  DGRWVIFNDNKVGAS--INPPK---DMGYLYFFER 809
           9***********988..34455...7888888876 PP

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraa.nnnleaAveyLldg 41
           ++e++++qlv+MGF++ ++++a  ++ n  +e+A+++Ll++
   Q: 622  ANEEIVAQLVSMGFNQLHCQKAAINTlNTGVEEAMNWLLSH 662
           589************************************97 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MEEINPMELL RSNLSRVRIP EPTNRIYKQE CCLSFDSPRS EGGLFIDMNT FLAFGKGYVV 60
WNYEKTGNPV YLHIKQTKKL VPEDRPSKKP TLLAIGIDGG FDNNEPEYEE THNIVILPNY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCTCTTCCT CCACCGTAAT ATCACTTGTT TGCAATTGAT CAATAATTTC GTAAAACTCG 60
TTCATATGCT TCGTAAAATC TTTTTTCTCT TTCATCTTAA ACGATACAAC TTTCATCTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR015940--UBA
IPR009060--UBA-like
IPR016652--Ubiquitinyl_hydrolase
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50030--UBA
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00627--UBA
PF00443--UCH
PF02148--zf-UBP

SMART

SM00165--UBA
SM00290--ZnF_UBP

Gene Ontology

GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0008270--F:zinc ion binding
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

tcc:TCM_031292

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000394	Aegilops tauschii	64.65	0.00e+00	1031.00
IUUC-Aml-002104	Ailuropoda melanoleuca	47.37	0.00e+00	752.00
IUUC-Atr-002580	Amborella trichopoda	70.05	0.00e+00	1211.00
IUUC-Apl-003774	Anas platyrhynchos	48.00	0.00e+00	746.00
IUUC-Aca-005368	Anolis carolinensis	48.34	0.00e+00	786.00
IUUC-Aly-005727	Arabidopsis lyrata	78.54	0.00e+00	1294.00
IUUC-Ath-006974	Arabidopsis thaliana	78.54	0.00e+00	1294.00
IUUC-Ago-007890	Ashbya gossypii	27.53	5.00e-69	254.00
IUUC-Acl-008057	Aspergillus clavatus	33.96	2.00e-116	412.00
IUUC-Afl-008547	Aspergillus flavus	35.93	5.00e-112	397.00
IUUC-Afu-008805	Aspergillus fumigatus	33.46	6.00e-106	377.00
IUUC-Ani-009441	Aspergillus nidulans	36.73	2.00e-94	339.00
IUUC-Ang-009720	Aspergillus niger	34.56	6.00e-108	384.00
IUUC-Aor-010111	Aspergillus oryzae	33.94	6.00e-122	431.00
IUUC-Ate-010531	Aspergillus terreus	33.42	2.00e-100	358.00
IUUC-Ame-011470	Astyanax mexicanus	42.04	0.00e+00	651.00
IUUC-Bgr-012183	Blumeria graminis	32.17	9.00e-107	380.00
IUUC-Bta-013179	Bos taurus	47.49	0.00e+00	756.00
IUUC-Bci-013858	Botrytis cinerea	32.89	8.00e-119	420.00
IUUC-Bdi-014904	Brachypodium distachyon	70.25	0.00e+00	1154.00
IUUC-Bol-015296	Brassica oleracea	78.51	0.00e+00	1298.00
IUUC-Bra-017939	Brassica rapa	79.25	0.00e+00	1307.00
IUUC-Cel-018625	Caenorhabditis elegans	32.88	2.00e-111	395.00
IUUC-Cja-019063	Callithrix jacchus	46.79	0.00e+00	748.00
IUUC-Cfa-020976	Canis familiaris	48.56	0.00e+00	766.00
IUUC-Cpo-022265	Cavia porcellus	48.32	0.00e+00	768.00
IUUC-Cre-022640	Chlamydomonas reinhardtii	38.51	7.00e-111	393.00
IUUC-Csa-024177	Chlorocebus sabaeus	49.05	0.00e+00	680.00
IUUC-Cho-024702	Choloepus hoffmanni	41.32	9.00e-118	417.00
IUUC-Cin-025411	Ciona intestinalis	43.01	6.00e-176	610.00
IUUC-Csv-026347	Ciona savignyi	40.66	1.00e-169	589.00
IUUC-Cgl-026667	Colletotrichum gloeosporioides	33.66	2.00e-104	372.00
IUUC-Cne-026831	Cryptococcus neoformans	35.83	8.00e-121	427.00
IUUC-Cme-027335	Cyanidioschyzon merolae	28.73	4.00e-51	196.00
IUUC-Dre-027982	Danio rerio	43.98	0.00e+00	656.00
IUUC-Dno-029034	Dasypus novemcinctus	47.49	0.00e+00	758.00
IUUC-Dor-030130	Dipodomys ordii	42.58	3.00e-95	342.00
IUUC-Dse-031467	Dothistroma septosporum	34.11	3.00e-115	408.00
IUUC-Dme-032075	Drosophila melanogaster	42.98	0.00e+00	647.00
IUUC-Ete-032865	Echinops telfairi	43.87	0.00e+00	671.00
IUUC-Eca-034059	Equus caballus	47.39	0.00e+00	756.00
IUUC-Eeu-035304	Erinaceus europaeus	45.03	0.00e+00	677.00
IUUC-Fca-035515	Felis catus	47.37	0.00e+00	756.00
IUUC-Fal-037271	Ficedula albicollis	49.31	0.00e+00	738.00
IUUC-Fox-037745	Fusarium oxysporum	35.69	2.00e-121	429.00
IUUC-Fso-038158	Fusarium solani	34.91	3.00e-119	421.00
IUUC-Gmo-039071	Gadus morhua	44.86	0.00e+00	673.00
IUUC-Ggr-040098	Gaeumannomyces graminis	33.78	2.00e-110	392.00
IUUC-Gga-040635	Gallus gallus	48.26	0.00e+00	785.00
IUUC-Gac-042528	Gasterosteus aculeatus	45.42	0.00e+00	681.00
IUUC-Gma-043614	Glycine max	80.25	0.00e+00	1274.00
IUUC-Ggo-044602	Gorilla gorilla	47.37	0.00e+00	757.00
IUUC-Hsa-045959	Homo sapiens	47.37	0.00e+00	757.00
IUUC-Hvu-047563	Hordeum vulgare	68.62	0.00e+00	897.00
IUUC-Itr-048712	Ictidomys tridecemlineatus	47.37	0.00e+00	764.00
IUUC-Kpa-049156	Komagataella pastoris	30.96	6.00e-107	380.00
IUUC-Lch-049648	Latimeria chalumnae	48.49	0.00e+00	761.00
IUUC-Lpe-051523	Leersia perrieri	68.45	0.00e+00	1138.00
IUUC-Loc-052072	Lepisosteus oculatus	43.60	0.00e+00	679.00
IUUC-Lma-053216	Leptosphaeria maculans	34.90	2.00e-110	394.00
IUUC-Laf-054327	Loxodonta africana	47.72	0.00e+00	761.00
IUUC-Mcc-055443	Macaca mulatta	47.60	0.00e+00	759.00
IUUC-Meu-056298	Macropus eugenii	51.11	9.00e-159	553.00
IUUC-Mor-057106	Magnaporthe oryzae	34.27	6.00e-117	414.00
IUUC-Mpo-057589	Magnaporthe poae	34.14	1.00e-112	399.00
IUUC-Mtr-058680	Medicago truncatula	81.04	0.00e+00	1315.00
IUUC-Mla-058903	Melampsora laricipopulina	33.09	5.00e-107	381.00
IUUC-Mga-059669	Meleagris gallopavo	47.96	0.00e+00	740.00
IUUC-Mvi-060476	Microbotryum violaceum	33.10	1.00e-104	373.00
IUUC-Mmr-060575	Microcebus murinus	47.49	0.00e+00	757.00
IUUC-Mdo-062183	Monodelphis domestica	48.45	0.00e+00	762.00
IUUC-Mmu-063592	Mus musculus	47.60	0.00e+00	760.00
IUUC-Mac-065634	Musa acuminata	69.33	0.00e+00	1184.00
IUUC-Mpu-066082	Mustela putorius furo	48.20	0.00e+00	768.00
IUUC-Mlu-067345	Myotis lucifugus	46.79	0.00e+00	752.00
IUUC-Nfi-068558	Neosartorya fischeri	34.69	8.00e-116	410.00
IUUC-Ncr-068960	Neurospora crassa	32.48	1.00e-105	376.00
IUUC-Nle-070173	Nomascus leucogenys	48.32	0.00e+00	763.00
IUUC-Opr-070556	Ochotona princeps	47.95	0.00e+00	773.00
IUUC-Ont-071502	Oreochromis niloticus	46.35	0.00e+00	686.00
IUUC-Oan-072959	Ornithorhynchus anatinus	55.20	1.00e-68	251.00
IUUC-Ocu-074861	Oryctolagus cuniculus	48.68	0.00e+00	777.00
IUUC-Oba-075109	Oryza barthii	69.59	0.00e+00	1144.00
IUUC-Obr-076292	Oryza brachyantha	70.46	0.00e+00	1130.00
IUUC-Ogl-077065	Oryza glaberrima	71.20	0.00e+00	1185.00
IUUC-Ogu-078776	Oryza glumaepatula	69.47	0.00e+00	1162.00
IUUC-Oin-080048	Oryza indica	70.83	0.00e+00	1177.00
IUUC-Olo-080711	Oryza longistaminata	68.15	0.00e+00	1064.00
IUUC-Ome-081506	Oryza meridionalis	69.53	0.00e+00	1074.00
IUUC-Oni-082320	Oryza nivara	67.67	0.00e+00	1134.00
IUUC-Opu-083801	Oryza punctata	69.96	0.00e+00	1124.00
IUUC-Oru-085139	Oryza rufipogon	67.67	0.00e+00	1133.00
IUUC-Osa-085713	Oryza sativa	71.32	0.00e+00	1189.00
IUUC-Ola-086951	Oryzias latipes	43.16	0.00e+00	655.00
IUUC-Olu-087822	Ostreococcus lucimarinus	38.34	1.00e-161	562.00
IUUC-Oga-088625	Otolemur garnettii	47.07	0.00e+00	761.00
IUUC-Oar-089995	Ovis aries	46.97	0.00e+00	747.00
IUUC-Ptr-090640	Pan troglodytes	46.55	0.00e+00	756.00
IUUC-Pan-091974	Papio anubis	47.02	0.00e+00	756.00
IUUC-Psi-093957	Pelodiscus sinensis	48.55	0.00e+00	800.00
IUUC-Pma-094242	Petromyzon marinus	49.10	1.00e-107	382.00
IUUC-Pno-094835	Phaeosphaeria nodorum	35.60	6.00e-104	370.00
IUUC-Ppa-095901	Physcomitrella patens	65.24	0.00e+00	1091.00
IUUC-Pfo-097148	Poecilia formosa	45.99	0.00e+00	686.00
IUUC-Pab-098068	Pongo abelii	43.27	0.00e+00	635.00
IUUC-Pop-098943	Populus trichocarpa	84.39	0.00e+00	1333.00
IUUC-Pca-100738	Procavia capensis	44.48	7.00e-146	510.00
IUUC-Ppe-101315	Prunus persica	83.87	0.00e+00	1353.00
IUUC-Pva-102154	Pteropus vampyrus	46.84	0.00e+00	746.00
IUUC-Pgr-103343	Puccinia graminis	34.30	3.00e-102	365.00
IUUC-Ptt-103928	Puccinia triticina	28.69	1.00e-90	327.00
IUUC-Pte-104306	Pyrenophora teres	33.74	2.00e-102	366.00
IUUC-Pyt-104696	Pyrenophora triticirepentis	34.77	8.00e-108	384.00
IUUC-Rno-105801	Rattus norvegicus	47.72	0.00e+00	763.00
IUUC-Sce-106304	Saccharomyces cerevisiae	30.29	5.00e-66	245.00
IUUC-Sha-107635	Sarcophilus harrisii	48.26	0.00e+00	759.00
IUUC-Sja-107678	Schizosaccharomyces japonicus	32.05	2.00e-94	339.00
IUUC-Spo-108144	Schizosaccharomyces pombe	33.37	2.00e-110	392.00
IUUC-Smo-108848	Selaginella moellendorffii	62.22	0.00e+00	983.00
IUUC-Sit-110728	Setaria italica	71.73	0.00e+00	1202.00
IUUC-Sly-111523	Solanum lycopersicum	75.34	0.00e+00	1278.00
IUUC-Sar-113733	Sorex araneus	46.23	1.00e-94	340.00
IUUC-Sbi-114419	Sorghum bicolor	72.10	0.00e+00	1197.00
IUUC-Sre-115225	Sporisorium reilianum	33.68	7.00e-107	380.00
IUUC-Ssc-115686	Sus scrofa	47.02	0.00e+00	758.00
IUUC-Tgu-117346	Taeniopygia guttata	48.09	0.00e+00	765.00
IUUC-Tru-118350	Takifugu rubripes	44.21	0.00e+00	673.00
IUUC-Tsy-119278	Tarsius syrichta	39.83	3.00e-161	561.00
IUUC-Tni-120658	Tetraodon nigroviridis	44.35	0.00e+00	652.00
IUUC-Tre-122043	Trichoderma reesei	35.00	2.00e-114	406.00
IUUC-Tvi-122303	Trichoderma virens	33.87	2.00e-115	409.00
IUUC-Tae-123798	Triticum aestivum	69.26	0.00e+00	1155.00
IUUC-Tur-126732	Triticum urartu	64.44	0.00e+00	1075.00
IUUC-Tme-126909	Tuber melanosporum	33.25	2.00e-103	369.00
IUUC-Tbe-127261	Tupaia belangeri	39.97	1.00e-119	423.00
IUUC-Ttr-128295	Tursiops truncatus	39.05	3.00e-163	568.00
IUUC-Uma-129599	Ustilago maydis	33.64	2.00e-112	399.00
IUUC-Vda-129688	Verticillium dahliae	34.32	3.00e-112	398.00
IUUC-Vpa-130170	Vicugna pacos	37.30	3.00e-142	498.00
IUUC-Vvi-131116	Vitis vinifera	83.42	0.00e+00	1309.00
IUUC-Xtr-131953	Xenopus tropicalis	47.61	0.00e+00	740.00
IUUC-Xma-133837	Xiphophorus maculatus	45.87	0.00e+00	683.00
IUUC-Yli-134510	Yarrowia lipolytica	33.17	3.00e-105	375.00
IUUC-Zma-135786	Zea mays	71.36	0.00e+00	1145.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence