iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076459

Ensembl Protein ID

OB02G17550.1

UniProt Accession

J3LAT8; J3LAT8_ORYBR

Protein Name

Coatomer subunit beta'

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB02G17550	OB02G17550.1	OB02G17550.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.80e-31	105.5	220	251
UBD/Beta-Prp	1.00e-56	193.0	50	281

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH+  +++++f ++ +++++Gs Dgt+++W  
   Q: 220  GHAHNISAVCFhPElPIILTGSEDGTVRLWHS 251
           8***********999***************75 PP

UBD/Beta-Prp

   S: 52   eaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpd 148
            ++v++ kf+ ++++ v g++D++i+v++++t + v ++++h+d++++++++p++ +++s s+d  i++wd+++g+   ++++gh++ v+ v+++p+
   Q: 50   PDAVRSSKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPK 146
           578*************************************************************************9999***************** PP
   S: 149  g.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgss 242
           + n ++s+slDrtv++W+l + +   tl g h + v++++     ++++l++gs+d+t k+wd+qt++cv+tl gh  n++ v f+p+  ++++gs+
   Q: 147  DtNTFASASLDRTVKVWSLGSPDPNFTLDG-HSKGVNCVDyfTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLDGHAHNISAVCFHPELPIILTGSE 242
           *****************************9.*********7445566************************************************** PP
   S: 243  DgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlv 281
           Dg++r+W +++  l +tl++  ++v++  +++ +++v++
   Q: 243  DGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVI 281
           **************************9999666666654 PP

Organism

Oryza brachyantha

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MAVMLAAAPV GYQEEARAEV REGQVCGSAS DRAMDFVESI FRERLHLELP DAVRSSKFIA 60
RKQWVVAGAD DMFIRVYNYN TMDKVKVFEA HTDYIRCVAV HPTQPFVLSS SDDMLIKLWD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTGTGA TGCTGGCAGC CGCTCCGGTT GGATATCAAG GTAACTACGG CGCCTCGCCT 60
CTCCCTCGGT TGGGATCTGC TTGTTGGTTT GTTGTGGTAT GTTTAGCTGA TGATGTTGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence