iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113805

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G275800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g031280	Sb04g031280.1	Sb04g031280.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.00e-30	105.5	4	75

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.tcPvtrqplteedlvPnltlrrliqawceen 72
           +p+ flCpIs+elM dPv++++G+tydr+sIe+w+  +g+ tcP t+qpl++ +l+Pn+tl+r+i +w++++
   Q: 4    PPHLFLCPISMELMDDPVTVSTGVTYDRRSIERWIFGCGRaTCPATMQPLANLELTPNHTLKRVIGSWLDDR 75
           7999*******************************999999***************************9875 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MEEPPHLFLC PISMELMDDP VTVSTGVTYD RRSIERWIFG CGRATCPATM QPLANLELTP 60
NHTLKRVIGS WLDDRGRGST STSASSSPST SSLSSPAHEL ATPLSRVLEA ERLRSALAGL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGAGC CTCCCCACCT GTTCCTGTGC CCCATCTCCA TGGAGCTCAT GGACGACCCC 60
GTCACCGTCT CCACGGGGGT CACCTACGAC CGCCGCAGCA TCGAGCGGTG GATCTTCGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g031280

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000809	Aegilops tauschii	82.45	1.00e-98	352.00
IUUC-Bdi-014372	Brachypodium distachyon	70.18	4.00e-130	457.00
IUUC-Hvu-047566	Hordeum vulgare	79.58	4.00e-166	576.00
IUUC-Lpe-050855	Leersia perrieri	71.82	1.00e-138	485.00
IUUC-Oba-075501	Oryza barthii	77.91	1.00e-148	518.00
IUUC-Obr-076599	Oryza brachyantha	79.25	3.00e-169	587.00
IUUC-Ogl-077111	Oryza glaberrima	79.30	1.00e-158	551.00
IUUC-Ogu-078584	Oryza glumaepatula	79.30	1.00e-158	551.00
IUUC-Oin-079855	Oryza indica	79.30	1.00e-158	551.00
IUUC-Olo-080660	Oryza longistaminata	64.57	1.00e-51	195.00
IUUC-Ome-081267	Oryza meridionalis	79.53	1.00e-158	551.00
IUUC-Oni-082485	Oryza nivara	79.30	1.00e-158	551.00
IUUC-Opu-083368	Oryza punctata	78.65	1.00e-138	485.00
IUUC-Oru-084495	Oryza rufipogon	79.30	1.00e-158	551.00
IUUC-Osa-085478	Oryza sativa	79.30	1.00e-158	551.00
IUUC-Sit-109870	Setaria italica	91.44	0.00e+00	660.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence