iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	16531490

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	3.20e-32	111.3	33	102

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawcee 71
           +p++f CpIs+elM+dPv+++sGitydr++Iekw++sg +tcPvt++ lt+ +++Pn+t+rr+iq wc +
   Q: 33   IPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQIPNHTIRRMIQGWCGS 102
           8*******************************************************************65 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR 60
ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC GSSLGGGIER IPTPRVPVTS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTAGTAATA AACGGTCAAA GAATGGGACT TTCATTGAGA GTGAGACGTC GTGGAGGAAG 60
TGTTAGCAAG AAAGAGATCA TTCCGGTGAC AAGTTGCTCG GAGGAAGTGG AGATAACCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0010200--P:response to chitin

KEGG

ath:AT1G66160

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003111	Amborella trichopoda	39.95	5.00e-80	290.00
IUUC-Aly-006049	Arabidopsis lyrata	93.75	0.00e+00	748.00
IUUC-Bol-015846	Brassica oleracea	72.39	4.00e-164	570.00
IUUC-Bra-017718	Brassica rapa	72.49	1.00e-170	592.00
IUUC-Gma-043233	Glycine max	45.39	6.00e-87	313.00
IUUC-Mtr-058526	Medicago truncatula	43.60	3.00e-90	325.00
IUUC-Mac-064571	Musa acuminata	31.75	1.00e-54	206.00
IUUC-Oba-075080	Oryza barthii	28.54	4.00e-42	164.00
IUUC-Obr-076534	Oryza brachyantha	36.30	4.00e-59	221.00
IUUC-Ogu-078872	Oryza glumaepatula	36.28	5.00e-70	257.00
IUUC-Oin-079622	Oryza indica	36.43	1.00e-68	253.00
IUUC-Ome-081665	Oryza meridionalis	34.22	3.00e-59	221.00
IUUC-Oni-082871	Oryza nivara	36.43	1.00e-68	253.00
IUUC-Oru-084561	Oryza rufipogon	36.43	1.00e-68	253.00
IUUC-Osa-086045	Oryza sativa	36.43	1.00e-68	253.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence