iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vvi-131566

Ensembl Protein ID

VIT_12s0028g03940.t01

UniProt Accession

F6H596; F6H596_VITVI

Genbank Protein ID

CCB47267.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN595235

Gene Name

VIT_12s0028g03940

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_12s0028g03940	VIT_12s0028g03940.t01	VIT_12s0028g03940.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	1.00e-09	38.7	642	716

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgseltlkvnpsdtVaeLKekiekklgip.peqqrLiykGkiLeddktLadyglkdgstihllekks 74
           +++++ksl g+  +l+v+  +tV+ +K k +kkl +  +e +++ y Gk+Led+k+La+ +++++s +hl+++k 
   Q: 642  MKIILKSLGGKGSKLHVDAEETVSSVKLKASKKLDFKpSEMVKIFYTGKELEDHKSLAAQNVQPNSLLHLVRTKI 716
           7899*******88************************88899*****************************9986 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MFGNVDGAGD LDYNYVFQDA KEHLAALADK LGPSLTDIDL SVKSPQTPAD GAEQDYDEKA 60
EDAVNYEDID EQYEGPEIQA ATEEDYLLSK KEYFSADVSV ASLDHSASVF DDDNYDEDEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTTGTTTC TACGATTGGA AAGCGAAAAA TCTCTGTGAT CAACAAGGTT GGTATCCAAT 60
TCTTGCCAAC TTTTCTTTCT AATTTTCCCG GGGAAATTCA ACTCATACAT TTTCTTTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0103--Bromodomain
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001487--Bromodomain
IPR018359--Bromodomain_CS
IPR009067--TAF_II_230-bd
IPR022591--TFIID_sub1_DUF3591
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS00633--BROMODOMAIN_1
PS50014--BROMODOMAIN_2
PS50053--UBIQUITIN_2

Pfam

PF00439--Bromodomain
PF12157--DUF3591
PF00240--ubiquitin

PRINTS

PR00503--BROMODOMAIN

SMART

SM00297--BROMO
SM00213--UBQ

Gene Ontology

GO:0005669--C:transcription factor TFIID complex
GO:0004402--F:histone acetyltransferase activity
GO:0001129--F:RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0043565--F:sequence-specific DNA binding
GO:0017025--F:TBP-class protein binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003084	Amborella trichopoda	56.52	0.00e+00	1806.00
IUUC-Aly-005900	Arabidopsis lyrata	54.37	0.00e+00	1744.00
IUUC-Ath-006976	Arabidopsis thaliana	55.98	0.00e+00	1753.00
IUUC-Bol-015982	Brassica oleracea	53.72	0.00e+00	1668.00
IUUC-Bra-017875	Brassica rapa	53.59	0.00e+00	1654.00
IUUC-Gma-044209	Glycine max	64.14	0.00e+00	2045.00
IUUC-Hvu-047343	Hordeum vulgare	50.19	0.00e+00	733.00
IUUC-Lpe-051566	Leersia perrieri	49.19	0.00e+00	1452.00
IUUC-Mpo-057370	Magnaporthe poae	33.01	3.00e-12	67.00
IUUC-Mac-064798	Musa acuminata	58.24	0.00e+00	1524.00
IUUC-Oba-075663	Oryza barthii	49.13	0.00e+00	1399.00
IUUC-Obr-076214	Oryza brachyantha	50.53	0.00e+00	1438.00
IUUC-Ogl-077575	Oryza glaberrima	49.13	0.00e+00	1398.00
IUUC-Ogu-079017	Oryza glumaepatula	49.39	0.00e+00	1380.00
IUUC-Oin-079864	Oryza indica	53.58	0.00e+00	1212.00
IUUC-Olo-080777	Oryza longistaminata	52.93	0.00e+00	1208.00
IUUC-Ome-081474	Oryza meridionalis	50.20	0.00e+00	1403.00
IUUC-Oni-082068	Oryza nivara	50.15	0.00e+00	1395.00
IUUC-Opu-083274	Oryza punctata	50.39	0.00e+00	1526.00
IUUC-Oru-085067	Oryza rufipogon	49.85	0.00e+00	1383.00
IUUC-Ppa-095489	Physcomitrella patens	54.74	0.00e+00	989.00
IUUC-Pop-099371	Populus trichocarpa	66.65	0.00e+00	2167.00
IUUC-Ppe-101917	Prunus persica	65.99	0.00e+00	2177.00
IUUC-Smo-109033	Selaginella moellendorffii	51.07	0.00e+00	898.00
IUUC-Sit-110106	Setaria italica	48.47	0.00e+00	1106.00
IUUC-Sly-111896	Solanum lycopersicum	64.75	0.00e+00	2088.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence