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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Cel-018201
UUCD1 version UUC-CaE-00614
Ensembl Protein ID Y48B6A.1
UniProt Accession Q9U2A9; BOP1_CAEEL
Genbank Protein ID CAB54439.1
Protein Name Ribosome biogenesis protein BOP1 homolog
Genbank Nucleotide ID AL110490
Gene Name Y48B6A.1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00012978 Y48B6A.1 Y48B6A.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNAmiRNAMapRAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.50e-16 59.4 342 382
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd..tllvsGsdDgtikvWDlrtgvllks 38
           gHt+ v+++   ++   ll+sG+ Dgt+++W + tg+++k+
   Q: 342  GHTGQVRAITVePErgELLASGGEDGTVRIWMIATGRCIKT 382
           8********999666699********************985 PP
   
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MASTSAATPL KNKRKFENGK KKPKTLKDEF GEKLDIKPVI VPPKPADEYD YDSSDEEDLR 60
NTIGNIPIKW YDDEDHIGYD KFGEKIAKPA KKGEIETFLE KMEDPDYWRK VFDKQTGTDV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Cel-018201|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGCTTCAA CGTCGGCGGC AACTCCGCTG AAGAACAAGC GAAAGTTTGA AAATGGGAAA 60
AAGAAGCCAA AAACGCTGAA AGACGAGTTT GGCGAGAAGC TCGACATCAA ACCGGTGATA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018201|E3,WD_repeat|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08145--BOP1NT
PF00400--WD40
SMART

SM01035--BOP1NT
SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
KEGG cel:CELE_Y48B6A.1
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001158 Aegilops tauschii 37.86 5.00e-108 384.00
IUUC-Aml-001507 Ailuropoda melanoleuca 46.70 4.00e-152 530.00
IUUC-Atr-003141 Amborella trichopoda 41.40 7.00e-85 306.00
IUUC-Apl-003545 Anas platyrhynchos 45.83 1.00e-143 501.00
IUUC-Aly-005649 Arabidopsis lyrata 39.52 2.00e-130 458.00
IUUC-Ath-007625 Arabidopsis thaliana 40.10 4.00e-130 457.00
IUUC-Ago-007958 Ashbya gossypii 39.39 1.00e-136 479.00
IUUC-Acl-008344 Aspergillus clavatus 37.98 3.00e-122 431.00
IUUC-Afl-008616 Aspergillus flavus 37.76 3.00e-120 424.00
IUUC-Afu-009083 Aspergillus fumigatus 38.34 8.00e-119 420.00
IUUC-Ani-009365 Aspergillus nidulans 37.61 1.00e-119 422.00
IUUC-Ang-009796 Aspergillus niger 37.32 2.00e-116 412.00
IUUC-Aor-010015 Aspergillus oryzae 37.76 4.00e-120 424.00
IUUC-Ate-010537 Aspergillus terreus 38.59 1.00e-123 436.00
IUUC-Ame-011767 Astyanax mexicanus 44.78 1.00e-63 234.00
IUUC-Bgr-012286 Blumeria graminis 38.77 4.00e-121 427.00
IUUC-Bta-013569 Bos taurus 46.39 5.00e-159 553.00
IUUC-Bci-013820 Botrytis cinerea 39.42 4.00e-118 417.00
IUUC-Bdi-014477 Brachypodium distachyon 40.65 2.00e-131 461.00
IUUC-Bol-016099 Brassica oleracea 39.94 2.00e-132 465.00
IUUC-Bra-017174 Brassica rapa 39.77 4.00e-132 464.00
IUUC-Cja-019009 Callithrix jacchus 41.73 8.00e-141 493.00
IUUC-Cfa-020173 Canis familiaris 43.89 8.00e-151 526.00
IUUC-Cpo-021796 Cavia porcellus 47.83 1.00e-162 565.00
IUUC-Cre-022650 Chlamydomonas reinhardtii 40.35 8.00e-132 462.00
IUUC-Csa-023440 Chlorocebus sabaeus 46.39 4.00e-165 573.00
IUUC-Cin-025782 Ciona intestinalis 42.10 4.00e-151 527.00
IUUC-Csv-026352 Ciona savignyi 41.61 1.00e-148 518.00
IUUC-Cgl-026393 Colletotrichum gloeosporioides 36.45 2.00e-98 352.00
IUUC-Cne-027004 Cryptococcus neoformans 38.31 5.00e-137 480.00
IUUC-Cme-027242 Cyanidioschyzon merolae 32.11 6.00e-100 357.00
IUUC-Dre-028658 Danio rerio 48.82 1.00e-179 621.00
IUUC-Dno-028883 Dasypus novemcinctus 46.20 2.00e-161 561.00
IUUC-Dor-031031 Dipodomys ordii 46.07 1.00e-166 578.00
IUUC-Dse-031443 Dothistroma septosporum 36.05 2.00e-123 435.00
IUUC-Dme-031786 Drosophila melanogaster 43.55 4.00e-160 557.00
IUUC-Eca-033677 Equus caballus 46.39 7.00e-160 556.00
IUUC-Eeu-035310 Erinaceus europaeus 47.42 6.00e-134 469.00
IUUC-Fca-035888 Felis catus 45.26 2.00e-160 558.00
IUUC-Fal-037438 Ficedula albicollis 42.00 3.00e-123 434.00
IUUC-Fox-037973 Fusarium oxysporum 37.02 2.00e-127 448.00
IUUC-Fso-038187 Fusarium solani 37.33 2.00e-127 448.00
IUUC-Gmo-039114 Gadus morhua 44.80 4.00e-153 533.00
IUUC-Ggr-039746 Gaeumannomyces graminis 37.94 5.00e-126 443.00
IUUC-Gga-040631 Gallus gallus 42.06 1.00e-75 275.00
IUUC-Gac-042582 Gasterosteus aculeatus 48.36 1.00e-164 571.00
IUUC-Gma-044215 Glycine max 39.11 9.00e-121 426.00
IUUC-Ggo-045587 Gorilla gorilla 46.40 1.00e-166 578.00
IUUC-Hsa-046319 Homo sapiens 46.39 4.00e-166 577.00
IUUC-Hvu-047526 Hordeum vulgare 40.87 9.00e-126 442.00
IUUC-Itr-048683 Ictidomys tridecemlineatus 46.55 1.00e-161 562.00
IUUC-Kpa-049221 Komagataella pastoris 37.19 2.00e-126 445.00
IUUC-Lch-049640 Latimeria chalumnae 49.29 0.00e+00 630.00
IUUC-Lpe-051135 Leersia perrieri 38.27 1.00e-115 408.00
IUUC-Loc-051930 Lepisosteus oculatus 48.08 2.00e-177 614.00
IUUC-Lma-053290 Leptosphaeria maculans 38.65 2.00e-118 418.00
IUUC-Laf-053903 Loxodonta africana 41.89 8.00e-137 479.00
IUUC-Mcc-055471 Macaca mulatta 46.39 3.00e-165 574.00
IUUC-Meu-056190 Macropus eugenii 46.15 4.00e-162 563.00
IUUC-Mor-057135 Magnaporthe oryzae 37.16 3.00e-115 407.00
IUUC-Mpo-057475 Magnaporthe poae 36.87 1.00e-116 412.00
IUUC-Mtr-058689 Medicago truncatula 37.65 2.00e-114 405.00
IUUC-Mla-059149 Melampsora laricipopulina 39.76 1.00e-141 495.00
IUUC-Mga-059645 Meleagris gallopavo 37.96 5.00e-45 172.00
IUUC-Mvi-060485 Microbotryum violaceum 39.67 2.00e-120 426.00
IUUC-Mmr-061674 Microcebus murinus 45.12 9.00e-156 542.00
IUUC-Mdo-062973 Monodelphis domestica 47.03 2.00e-166 578.00
IUUC-Mmu-064180 Mus musculus 46.71 3.00e-161 561.00
IUUC-Mac-064535 Musa acuminata 41.42 4.00e-92 331.00
IUUC-Mpu-066406 Mustela putorius furo 46.87 6.00e-163 566.00
IUUC-Mlu-067795 Myotis lucifugus 46.71 1.00e-153 535.00
IUUC-Nfi-068516 Neosartorya fischeri 38.04 1.00e-111 396.00
IUUC-Ncr-068767 Neurospora crassa 37.48 1.00e-112 399.00
IUUC-Opr-071084 Ochotona princeps 47.25 9.00e-69 252.00
IUUC-Ont-071614 Oreochromis niloticus 48.25 3.00e-175 607.00
IUUC-Oba-075980 Oryza barthii 38.67 3.00e-116 410.00
IUUC-Obr-076799 Oryza brachyantha 41.20 8.00e-131 459.00
IUUC-Ogl-077134 Oryza glaberrima 40.48 8.00e-126 442.00
IUUC-Ogu-078655 Oryza glumaepatula 38.71 6.00e-120 423.00
IUUC-Oin-079654 Oryza indica 40.48 9.00e-126 442.00
IUUC-Olo-080706 Oryza longistaminata 38.83 4.00e-116 410.00
IUUC-Ome-081716 Oryza meridionalis 35.23 7.00e-99 353.00
IUUC-Oni-082508 Oryza nivara 37.52 9.00e-116 409.00
IUUC-Opu-083707 Oryza punctata 38.67 3.00e-115 407.00
IUUC-Oru-084453 Oryza rufipogon 38.83 4.00e-116 410.00
IUUC-Osa-085811 Oryza sativa 40.32 1.00e-125 442.00
IUUC-Ola-087361 Oryzias latipes 48.91 6.00e-177 612.00
IUUC-Oga-088015 Otolemur garnettii 45.10 2.00e-161 561.00
IUUC-Oar-090058 Ovis aries 34.99 4.00e-57 214.00
IUUC-Ptr-090631 Pan troglodytes 48.73 2.00e-81 294.00
IUUC-Pan-092306 Papio anubis 46.63 2.00e-165 574.00
IUUC-Pma-094622 Petromyzon marinus 46.08 4.00e-173 600.00
IUUC-Pno-094794 Phaeosphaeria nodorum 35.12 7.00e-111 393.00
IUUC-Ppa-095528 Physcomitrella patens 42.56 4.00e-91 327.00
IUUC-Pfo-096682 Poecilia formosa 47.73 7.00e-179 619.00
IUUC-Pab-097939 Pongo abelii 45.60 1.00e-144 504.00
IUUC-Pop-099043 Populus trichocarpa 40.24 3.00e-114 404.00
IUUC-Pca-100333 Procavia capensis 45.26 2.00e-155 541.00
IUUC-Ppe-102078 Prunus persica 39.74 1.00e-125 442.00
IUUC-Pgr-103525 Puccinia graminis 40.60 4.00e-134 470.00
IUUC-Ptt-103929 Puccinia triticina 40.10 6.00e-129 453.00
IUUC-Pte-104029 Pyrenophora teres 39.02 3.00e-133 467.00
IUUC-Pyt-104446 Pyrenophora triticirepentis 38.86 3.00e-132 464.00
IUUC-Rno-105248 Rattus norvegicus 47.03 1.00e-162 565.00
IUUC-Sce-106381 Saccharomyces cerevisiae 38.74 4.00e-135 474.00
IUUC-Sha-106519 Sarcophilus harrisii 47.05 1.00e-168 585.00
IUUC-Sja-107908 Schizosaccharomyces japonicus 36.32 4.00e-120 424.00
IUUC-Spo-108071 Schizosaccharomyces pombe 35.83 4.00e-116 410.00
IUUC-Smo-109604 Selaginella moellendorffii 42.25 2.00e-135 474.00
IUUC-Sit-110551 Setaria italica 40.16 3.00e-127 447.00
IUUC-Sly-110970 Solanum lycopersicum 42.65 1.00e-76 279.00
IUUC-Stu-112593 Solanum tuberosum 40.19 7.00e-133 466.00
IUUC-Sar-113123 Sorex araneus 39.24 1.00e-56 212.00
IUUC-Sbi-113945 Sorghum bicolor 40.10 3.00e-128 451.00
IUUC-Sre-115188 Sporisorium reilianum 40.61 4.00e-136 478.00
IUUC-Ssc-115352 Sus scrofa 46.40 2.00e-164 570.00
IUUC-Tru-117685 Takifugu rubripes 48.74 8.00e-178 615.00
IUUC-Tni-119982 Tetraodon nigroviridis 48.01 7.00e-169 585.00
IUUC-Tca-121664 Theobroma cacao 39.78 1.00e-129 456.00
IUUC-Tre-122229 Trichoderma reesei 37.08 1.00e-110 392.00
IUUC-Tvi-122576 Trichoderma virens 37.98 2.00e-112 398.00
IUUC-Tae-124110 Triticum aestivum 40.94 1.00e-118 419.00
IUUC-Tur-126781 Triticum urartu 38.20 6.00e-105 374.00
IUUC-Tme-127080 Tuber melanosporum 41.04 3.00e-143 501.00
IUUC-Ttr-128514 Tursiops truncatus 46.83 5.00e-115 407.00
IUUC-Uma-129556 Ustilago maydis 39.97 2.00e-130 459.00
IUUC-Vda-129715 Verticillium dahliae 38.13 2.00e-119 421.00
IUUC-Vvi-131211 Vitis vinifera 39.43 2.00e-122 431.00
IUUC-Xma-133883 Xiphophorus maculatus 47.64 1.00e-173 602.00
IUUC-Yli-134438 Yarrowia lipolytica 38.03 4.00e-119 421.00
IUUC-Zma-135341 Zea mays 32.55 1.00e-88 319.00
Created Date 25-Jun-2017

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