iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ncr-068719

Ensembl Protein ID

ESA42456

UniProt Accession

Q9C2I5; V5ILF1; YTM1_NEUCR

Genbank Protein ID

CAC28659.1; ESA42456.1; ESA42457.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

AL513443; CM002240; CM002240

Gene Name

ytm1; 93G11.070; NCU03764

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
NCU03764	ESA42456	ESA42456

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.90e-27	91.0	381	415

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrt 32
           gH+++v +la    ++  lvsGs+Dgt+++WDlr+
   Q: 381  GHANKVVSLAAnpeNEYSLVSGSHDGTCRIWDLRS 415
           799999999989544466**************997 PP

Organism

Neurospora crassa

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MDHPTESGAQ VRVTFTTQEE DIQLDESKRQ LLVPADIRRY GLSRILNSES MLDTNSIPFD 60
FLVNGSFLRG SLEEYLNANG LSLETNITLQ YVRSLIPPTY EASFEHDDWV SAVDVLSATS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGGATGGAGT CTTGGATTTG GCATGGCCTT GTGGTGTCCG CTGCAAAGTA AACATCCACA 60
CTCTCCTCCC GACGACGCCT GTTTCACGGT AATCTAAGCC AATCTGACTT TTACTTGTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

KEGG

ncr:NCU03764

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	29.88	2.00e-40	157.00
IUUC-Aml-001997	Ailuropoda melanoleuca	27.91	5.00e-34	136.00
IUUC-Atr-002544	Amborella trichopoda	27.87	5.00e-35	140.00
IUUC-Apl-003981	Anas platyrhynchos	27.61	2.00e-36	144.00
IUUC-Aca-004370	Anolis carolinensis	25.94	1.00e-39	155.00
IUUC-Aly-006455	Arabidopsis lyrata	27.20	9.00e-38	149.00
IUUC-Ath-006669	Arabidopsis thaliana	29.15	3.00e-36	144.00
IUUC-Ago-007864	Ashbya gossypii	41.78	6.00e-94	335.00
IUUC-Acl-008177	Aspergillus clavatus	55.00	3.00e-137	479.00
IUUC-Afl-008617	Aspergillus flavus	55.72	1.00e-134	471.00
IUUC-Afu-008752	Aspergillus fumigatus	54.91	5.00e-132	462.00
IUUC-Ani-009136	Aspergillus nidulans	55.49	1.00e-138	484.00
IUUC-Ang-009701	Aspergillus niger	51.37	1.00e-125	441.00
IUUC-Aor-009884	Aspergillus oryzae	55.83	2.00e-135	473.00
IUUC-Ate-010472	Aspergillus terreus	52.23	2.00e-84	303.00
IUUC-Ame-011432	Astyanax mexicanus	25.89	5.00e-37	146.00
IUUC-Bgr-012218	Blumeria graminis	60.35	4.00e-151	525.00
IUUC-Bta-012829	Bos taurus	27.14	3.00e-34	137.00
IUUC-Bci-013953	Botrytis cinerea	61.51	4.00e-166	575.00
IUUC-Bdi-014351	Brachypodium distachyon	28.97	2.00e-36	144.00
IUUC-Bol-016190	Brassica oleracea	31.54	2.00e-39	154.00
IUUC-Bra-017876	Brassica rapa	31.16	8.00e-40	155.00
IUUC-Cel-018569	Caenorhabditis elegans	22.01	7.00e-13	66.60
IUUC-Cja-019468	Callithrix jacchus	27.41	1.00e-35	142.00
IUUC-Cfa-020471	Canis familiaris	27.35	7.00e-33	132.00
IUUC-Cpo-022260	Cavia porcellus	26.99	8.00e-34	135.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	29.29	3.00e-39	154.00
IUUC-Csa-023989	Chlorocebus sabaeus	27.20	4.00e-34	137.00
IUUC-Cho-024426	Choloepus hoffmanni	26.97	3.00e-25	107.00
IUUC-Cin-025789	Ciona intestinalis	24.47	3.00e-24	104.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	63.49	7.00e-48	181.00
IUUC-Cne-027063	Cryptococcus neoformans	26.22	2.00e-26	111.00
IUUC-Dre-027907	Danio rerio	25.77	3.00e-37	147.00
IUUC-Dno-029225	Dasypus novemcinctus	26.72	3.00e-33	134.00
IUUC-Dor-031082	Dipodomys ordii	26.53	2.00e-15	75.50
IUUC-Dse-031308	Dothistroma septosporum	47.19	8.00e-111	392.00
IUUC-Dme-032189	Drosophila melanogaster	27.75	2.00e-32	131.00
IUUC-Ete-032247	Echinops telfairi	25.73	3.00e-29	120.00
IUUC-Eca-034285	Equus caballus	27.50	9.00e-34	135.00
IUUC-Eeu-035322	Erinaceus europaeus	28.87	3.00e-25	107.00
IUUC-Fca-036114	Felis catus	27.92	7.00e-35	139.00
IUUC-Fal-036891	Ficedula albicollis	26.68	7.00e-30	122.00
IUUC-Fox-037965	Fusarium oxysporum	62.26	1.00e-160	557.00
IUUC-Fso-038244	Fusarium solani	61.08	1.00e-156	544.00
IUUC-Gmo-039040	Gadus morhua	26.56	2.00e-40	157.00
IUUC-Ggr-040093	Gaeumannomyces graminis	59.04	8.00e-135	471.00
IUUC-Gga-040610	Gallus gallus	27.21	4.00e-36	143.00
IUUC-Gac-042117	Gasterosteus aculeatus	27.14	1.00e-38	152.00
IUUC-Gma-043756	Glycine max	29.33	6.00e-42	163.00
IUUC-Ggo-045179	Gorilla gorilla	26.99	3.00e-35	140.00
IUUC-Hsa-046114	Homo sapiens	27.20	1.00e-34	138.00
IUUC-Hvu-047331	Hordeum vulgare	27.66	1.00e-32	132.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	26.51	5.00e-33	133.00
IUUC-Kpa-049304	Komagataella pastoris	41.78	4.00e-99	353.00
IUUC-Lch-050655	Latimeria chalumnae	27.25	9.00e-30	122.00
IUUC-Lpe-051675	Leersia perrieri	29.60	6.00e-40	156.00
IUUC-Loc-052868	Lepisosteus oculatus	27.29	3.00e-41	160.00
IUUC-Lma-053258	Leptosphaeria maculans	45.77	3.00e-117	415.00
IUUC-Laf-053993	Loxodonta africana	27.42	3.00e-34	137.00
IUUC-Mcc-055128	Macaca mulatta	24.30	9.00e-20	89.40
IUUC-Meu-056501	Macropus eugenii	28.10	4.00e-33	133.00
IUUC-Mor-057114	Magnaporthe oryzae	64.42	1.00e-171	594.00
IUUC-Mpo-057463	Magnaporthe poae	57.84	5.00e-60	221.00
IUUC-Mtr-058367	Medicago truncatula	27.57	9.00e-35	139.00
IUUC-Mla-059107	Melampsora laricipopulina	29.25	9.00e-43	166.00
IUUC-Mga-059745	Meleagris gallopavo	26.99	2.00e-35	141.00
IUUC-Mvi-060362	Microbotryum violaceum	28.21	2.00e-38	151.00
IUUC-Mdo-062257	Monodelphis domestica	26.51	1.00e-36	145.00
IUUC-Mmu-063546	Mus musculus	26.36	9.00e-34	135.00
IUUC-Mac-065540	Musa acuminata	27.45	6.00e-41	159.00
IUUC-Mpu-066284	Mustela putorius furo	27.35	8.00e-35	139.00
IUUC-Mlu-067241	Myotis lucifugus	27.35	4.00e-35	140.00
IUUC-Nfi-068260	Neosartorya fischeri	55.74	1.00e-134	471.00
IUUC-Nle-068981	Nomascus leucogenys	26.62	4.00e-34	137.00
IUUC-Opr-071218	Ochotona princeps	26.00	7.00e-33	132.00
IUUC-Ont-071646	Oreochromis niloticus	25.77	2.00e-36	144.00
IUUC-Oan-073453	Ornithorhynchus anatinus	26.36	4.00e-41	160.00
IUUC-Ocu-074008	Oryctolagus cuniculus	26.72	3.00e-35	140.00
IUUC-Oba-075712	Oryza barthii	30.02	5.00e-29	120.00
IUUC-Obr-076721	Oryza brachyantha	29.55	8.00e-40	155.00
IUUC-Ogl-077229	Oryza glaberrima	30.99	5.00e-42	163.00
IUUC-Ogu-078977	Oryza glumaepatula	30.17	2.00e-28	117.00
IUUC-Oin-079683	Oryza indica	31.37	9.00e-42	162.00
IUUC-Olo-080291	Oryza longistaminata	28.69	2.00e-21	94.70
IUUC-Ome-081834	Oryza meridionalis	31.84	2.00e-41	161.00
IUUC-Oni-082507	Oryza nivara	30.19	1.00e-36	145.00
IUUC-Opu-083396	Oryza punctata	30.90	3.00e-39	154.00
IUUC-Oru-085220	Oryza rufipogon	30.19	5.00e-36	143.00
IUUC-Osa-085767	Oryza sativa	31.37	9.00e-42	162.00
IUUC-Ola-087420	Oryzias latipes	27.10	5.00e-41	160.00
IUUC-Olu-087740	Ostreococcus lucimarinus	23.36	4.00e-23	100.00
IUUC-Oga-088264	Otolemur garnettii	26.42	2.00e-32	131.00
IUUC-Oar-089335	Ovis aries	27.14	6.00e-34	136.00
IUUC-Ptr-091320	Pan troglodytes	27.20	1.00e-34	138.00
IUUC-Pan-092833	Papio anubis	27.20	2.00e-34	138.00
IUUC-Psi-093504	Pelodiscus sinensis	26.78	1.00e-33	135.00
IUUC-Pma-094189	Petromyzon marinus	25.80	2.00e-35	141.00
IUUC-Pno-094929	Phaeosphaeria nodorum	48.55	1.00e-121	427.00
IUUC-Ppa-095429	Physcomitrella patens	30.14	2.00e-44	171.00
IUUC-Pfo-096337	Poecilia formosa	26.50	2.00e-39	155.00
IUUC-Pab-097571	Pongo abelii	27.20	1.00e-34	138.00
IUUC-Pop-099977	Populus trichocarpa	28.97	1.00e-38	151.00
IUUC-Pca-100394	Procavia capensis	26.82	5.00e-28	117.00
IUUC-Ppe-101848	Prunus persica	28.18	8.00e-40	155.00
IUUC-Pva-102921	Pteropus vampyrus	27.31	4.00e-16	77.40
IUUC-Pgr-103637	Puccinia graminis	27.97	5.00e-48	183.00
IUUC-Ptt-103781	Puccinia triticina	27.61	4.00e-47	180.00
IUUC-Pte-104135	Pyrenophora teres	45.55	3.00e-107	382.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	45.00	9.00e-108	381.00
IUUC-Rno-105114	Rattus norvegicus	26.72	2.00e-34	137.00
IUUC-Sce-106401	Saccharomyces cerevisiae	40.04	1.00e-92	332.00
IUUC-Sha-107122	Sarcophilus harrisii	26.82	4.00e-34	137.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	35.58	1.00e-72	265.00
IUUC-Spo-108134	Schizosaccharomyces pombe	34.16	9.00e-68	248.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	61.84	2.00e-171	593.00
IUUC-Smo-108761	Selaginella moellendorffii	27.73	5.00e-33	133.00
IUUC-Sit-110311	Setaria italica	28.87	1.00e-35	142.00
IUUC-Sly-111178	Solanum lycopersicum	28.04	1.00e-38	152.00
IUUC-Stu-112169	Solanum tuberosum	27.55	9.00e-40	155.00
IUUC-Sar-113596	Sorex araneus	26.78	1.00e-21	95.50
IUUC-Sbi-114193	Sorghum bicolor	28.64	1.00e-36	145.00
IUUC-Sre-115002	Sporisorium reilianum	27.01	8.00e-26	109.00
IUUC-Ssc-116066	Sus scrofa	27.35	9.00e-35	139.00
IUUC-Tgu-117048	Taeniopygia guttata	27.27	7.00e-36	142.00
IUUC-Tni-119820	Tetraodon nigroviridis	27.14	3.00e-38	150.00
IUUC-Tca-121605	Theobroma cacao	29.08	2.00e-40	158.00
IUUC-Tre-121947	Trichoderma reesei	62.03	4.00e-163	565.00
IUUC-Tvi-122481	Trichoderma virens	62.24	6.00e-163	565.00
IUUC-Tae-123847	Triticum aestivum	29.88	2.00e-40	157.00
IUUC-Tur-126586	Triticum urartu	28.68	3.00e-35	140.00
IUUC-Tme-126900	Tuber melanosporum	42.23	2.00e-100	357.00
IUUC-Uma-129628	Ustilago maydis	26.91	6.00e-22	97.10
IUUC-Vpa-130260	Vicugna pacos	27.56	3.00e-35	140.00
IUUC-Vvi-131009	Vitis vinifera	28.81	7.00e-43	166.00
IUUC-Xtr-132083	Xenopus tropicalis	28.03	4.00e-40	157.00
IUUC-Xma-133094	Xiphophorus maculatus	26.51	4.00e-38	150.00
IUUC-Yli-134531	Yarrowia lipolytica	35.86	1.00e-72	265.00
IUUC-Zma-135509	Zea mays	30.75	1.00e-39	155.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence