iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lpe-051597

Ensembl Protein ID

LPERR03G05640.1

UniProt Accession

A0A0D9VQF6; A0A0D9VQF6_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LPERR03G05640	LPERR03G05640.1	LPERR03G05640.1
LPERR03G05640	LPERR03G05640.2	LPERR03G05640.2
LPERR03G05640	LPERR03G05640.3	LPERR03G05640.3
LPERR03G05640	LPERR03G05640.4	LPERR03G05640.4
LPERR03G05640	LPERR03G05640.5	LPERR03G05640.5
LPERR03G05640	LPERR03G05640.6	LPERR03G05640.6
LPERR03G05640	LPERR03G05640.7	LPERR03G05640.7
LPERR03G05640	LPERR03G05640.8	LPERR03G05640.8
LPERR03G05640	LPERR03G05640.9	LPERR03G05640.9

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.30e-35	118.0	223	258
UBD/Beta-Prp	7.50e-54	183.8	53	298

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H+++++cl+f +   ll++Gs D+t+k WDl t+ l
   Q: 223  HEGPINCLDFhPHeFLLATGSADKTVKFWDLETFEL 258
           9*********9776789**************99876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           +h s ++cvk+ ++ +++l+tg++d+++ vw + +++++ slsg +++v +v+f++++ ++  g++ +tik+wd++  k ++t++gh +s  sl
   Q: 53   AHASDVNCVKVgKRTSRILITGGEDKKVNVWAIGKPSAVLSLSGLTSPVDSVSFDSSEVMIGAGASSGTIKIWDVEEAKVIRTFTGHRSSCASL 146
           67788999*************************************************9999999999*************************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngke 194
           +f+p g++++sGs+d   ++wd++++ c++ t +gh++ + ++++ pdg+ +vsG+ D+ v++Wdl  gkll++++  h++++++l+f++  + 
   Q: 147  DFHPFGEFFASGSSDTNMKIWDMRKKGCIH-TYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFKM-HEGPINCLDFHPHEFL 238
           ******************************.********************************************98.**************** PP
   S: 195  lvsgsldgtvklwdlqtgec........vrtlnghtdnvksvrfspnderlvsgssDgsir 247
           l++gs d+tvk+wdl+t e          r++ +  + v+s+ f ++++ l +g  ++s++
   Q: 239  LATGSADKTVKFWDLETFELigssgpenSREYFEPASVVRSMTFNKDGKSLFCGL-HESLK 298
           ****************55555555555599999999************9999985.44444 PP

Organism

Leersia perrieri

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAQGVWMSST NVLHRFSSAG AHAEQRKTTK SVFGNLREEQ RKMTKSVSEE FVAHASDVNC 60
VKVGKRTSRI LITGGEDKKV NVWAIGKPSA VLSLSGLTSP VDSVSFDSSE VMIGAGASSG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCAAG GGGTTTGGAT GTCATCCACA AATGTCCTCC ACAGGTTTAG TTCTGCTGGA 60
GCACGTTCCA CACGCCAAAT ACCGGATGTA TGACCACATA AATGAGTTGA TGGGATGCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	66.60	0.00e+00	630.00
IUUC-Bdi-014552	Brachypodium distachyon	75.75	0.00e+00	721.00
IUUC-Hvu-047781	Hordeum vulgare	75.00	0.00e+00	716.00
IUUC-Mga-059608	Meleagris gallopavo	31.73	2.00e-103	369.00
IUUC-Oba-075845	Oryza barthii	85.84	0.00e+00	822.00
IUUC-Obr-076798	Oryza brachyantha	85.02	0.00e+00	859.00
IUUC-Ogu-079022	Oryza glumaepatula	85.41	0.00e+00	816.00
IUUC-Oin-080135	Oryza indica	85.84	0.00e+00	821.00
IUUC-Olo-080665	Oryza longistaminata	86.01	0.00e+00	737.00
IUUC-Ome-081884	Oryza meridionalis	86.23	0.00e+00	820.00
IUUC-Oni-082726	Oryza nivara	85.84	0.00e+00	822.00
IUUC-Opu-083637	Oryza punctata	84.99	0.00e+00	833.00
IUUC-Oru-085123	Oryza rufipogon	85.84	0.00e+00	821.00
IUUC-Osa-086267	Oryza sativa	85.84	0.00e+00	821.00
IUUC-Oar-089483	Ovis aries	32.99	1.00e-105	376.00
IUUC-Psi-093830	Pelodiscus sinensis	32.10	7.00e-101	360.00
IUUC-Sit-109837	Setaria italica	74.46	0.00e+00	718.00
IUUC-Tae-123176	Triticum aestivum	71.22	0.00e+00	676.00
IUUC-Xtr-132915	Xenopus tropicalis	31.86	1.00e-102	366.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence