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Tag Content
UUCD2 ID IUUC-Aly-005956
UUCD1 version UUC-ArL-00981
Ensembl Protein ID scaffold_701247.1
UniProt Accession D7MCH1; D7MCH1_ARALL
Genbank Protein ID EFH45667.1
Protein Name Putative uncharacterized protein
Genbank Nucleotide ID GL348719
Gene Name VIP3; ARALYDRAFT_913505
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
scaffold_701247.1 scaffold_701247.1 scaffold_701247.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.40e-38 127.6 241 272
UBD/Beta-Prp 3.90e-56 191.1 23 320
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
    gHt++v +++ +d + +++Gs D t+++WDl
   Q: 241 GHTSWVLSVDAsPDgGAIATGSSDRTVRLWDL 272
    8*********99999****************8 PP
   


   UBD/Beta-Prp

   S: 18   f...spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg 106
    + + ll+tgs d+t+k+w+ ++ +l+r+ gh+ +v+a+ +p+g i +++s D +++v+d++t+ ++ +l++ ++v+ ++f p+g
   Q: 23 VpatEDRPALLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKG 114
    35434445699***************************************9***************************************88 PP
   S: 107 .dklvsGshdrtirvwdletgqclee............tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvys 185
    v+G++ +++wd+++ +++ ++ +++v +v+++p+g+ l+ Gs D+t+ ++d+ + kll++l+g h+ + +s
   Q: 115 tILAVAGGSSASVKLWDTSSWRLISTlsiprpeapkpsEKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEG-HNMPARS 205
    567789999**********9999999***********9999******************************************9.******* PP
   S: 186 lsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav.... 272
    l f++ + l sgs+dg v++ d + ++ + ++ ght++v+sv++sp++ +++gssD+++r+Wdl+ + ++t+++hn++v+sva+
   Q: 206 LVFSPVDpRILFSGSDDGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFrppg 297
    ****97758889****************************************************************************7776 PP
   S: 273 .lsfgdnvlvlgsedskvniwkl 294
    ++ l+++s+d++v ++++
   Q: 298 gTGVRAGRLASVSDDKSVSLYDY 320
    666668889************98 PP
   

Organism Arabidopsis lyrata
Protein Sequence
(Fasta)
MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS 60
LGVAALAAHP SGIIAASSSL DSFVRVFDVD TNATIAVLEA PPSEVWGMQF EPKGTILAVA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Aly-005956|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTAAAAAACC TAAAAAGAGA ATGAAACTCG CAGGTCTGAA ATCGATCGAG AACGCTCACG 60
AAGATTCCGT TTGGGCGGCG ACGTGGGTTC CGGCGACGGA AGATCGGCCG GCGTTACTTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Aly-005956|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0016593--C:Cdc73/Paf1 complex
GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0010452--P:histone H3-K36 methylation
GO:0051568--P:histone H3-K4 methylation
GO:0009910--P:negative regulation of flower development
GO:0016441--P:posttranscriptional gene silencing

KEGG aly:ARALYDRAFT_913505
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000774 Aegilops tauschii 62.25 2.00e-115 407.00
IUUC-Aml-002245 Ailuropoda melanoleuca 37.50 6.00e-53 200.00
IUUC-Atr-003142 Amborella trichopoda 73.46 4.00e-91 326.00
IUUC-Apl-003179 Anas platyrhynchos 38.02 7.00e-58 216.00
IUUC-Aca-004880 Anolis carolinensis 38.98 1.00e-61 228.00
IUUC-Ath-007230 Arabidopsis thaliana 98.13 1.00e-174 604.00
IUUC-Ame-011511 Astyanax mexicanus 38.54 3.00e-57 214.00
IUUC-Bta-012936 Bos taurus 37.82 2.00e-53 202.00
IUUC-Bdi-015020 Brachypodium distachyon 68.73 6.00e-112 396.00
IUUC-Bol-016345 Brassica oleracea 97.51 0.00e+00 634.00
IUUC-Bra-017323 Brassica rapa 97.20 0.00e+00 632.00
IUUC-Cja-019961 Callithrix jacchus 37.82 2.00e-53 201.00
IUUC-Cfa-020862 Canis familiaris 37.82 2.00e-53 201.00
IUUC-Cpo-021356 Cavia porcellus 37.50 4.00e-53 201.00
IUUC-Cre-022602 Chlamydomonas reinhardtii 41.21 2.00e-52 198.00
IUUC-Csa-024067 Chlorocebus sabaeus 37.82 3.00e-53 201.00
IUUC-Cin-025261 Ciona intestinalis 37.82 4.00e-60 224.00
IUUC-Cne-026846 Cryptococcus neoformans 28.53 1.00e-25 109.00
IUUC-Dre-027706 Danio rerio 31.73 3.00e-38 151.00
IUUC-Dno-029084 Dasypus novemcinctus 37.90 4.00e-52 197.00
IUUC-Dor-030353 Dipodomys ordii 33.57 6.00e-42 163.00
IUUC-Dme-031836 Drosophila melanogaster 34.81 2.00e-52 199.00
IUUC-Ete-032261 Echinops telfairi 37.74 3.00e-52 197.00
IUUC-Eca-034231 Equus caballus 34.28 6.00e-44 170.00
IUUC-Eeu-034828 Erinaceus europaeus 37.22 5.00e-50 190.00
IUUC-Fca-036569 Felis catus 37.50 5.00e-53 200.00
IUUC-Fal-037469 Ficedula albicollis 38.98 6.00e-58 216.00
IUUC-Fox-038047 Fusarium oxysporum 27.68 5.00e-24 104.00
IUUC-Gmo-039579 Gadus morhua 39.10 4.00e-58 217.00
IUUC-Gga-040808 Gallus gallus 37.82 2.00e-56 211.00
IUUC-Gac-042100 Gasterosteus aculeatus 39.42 2.00e-58 218.00
IUUC-Gma-044408 Glycine max 79.13 6.00e-151 526.00
IUUC-Ggo-045227 Gorilla gorilla 37.82 2.00e-53 201.00
IUUC-Hsa-045839 Homo sapiens 37.82 2.00e-53 201.00
IUUC-Hvu-047591 Hordeum vulgare 66.56 7.00e-118 416.00
IUUC-Itr-048741 Ictidomys tridecemlineatus 37.82 2.00e-53 201.00
IUUC-Lch-049549 Latimeria chalumnae 36.54 1.00e-53 202.00
IUUC-Lpe-050746 Leersia perrieri 69.23 5.00e-118 416.00
IUUC-Loc-052540 Lepisosteus oculatus 38.46 3.00e-54 204.00
IUUC-Laf-053907 Loxodonta africana 37.82 2.00e-53 201.00
IUUC-Mcc-055828 Macaca mulatta 35.54 6.00e-50 190.00
IUUC-Meu-056075 Macropus eugenii 36.86 3.00e-47 181.00
IUUC-Mtr-057728 Medicago truncatula 79.13 6.00e-138 482.00
IUUC-Mga-059872 Meleagris gallopavo 38.66 1.00e-57 215.00
IUUC-Mmr-060985 Microcebus murinus 37.42 3.00e-52 197.00
IUUC-Mdo-062758 Monodelphis domestica 38.98 1.00e-57 215.00
IUUC-Mmu-063580 Mus musculus 37.50 1.00e-52 199.00
IUUC-Mac-064880 Musa acuminata 77.64 2.00e-148 517.00
IUUC-Mpu-066577 Mustela putorius furo 37.50 2.00e-52 198.00
IUUC-Nle-069573 Nomascus leucogenys 37.82 2.00e-53 201.00
IUUC-Opr-070216 Ochotona princeps 37.50 7.00e-53 199.00
IUUC-Ont-071981 Oreochromis niloticus 39.74 2.00e-58 218.00
IUUC-Oan-073223 Ornithorhynchus anatinus 39.13 3.00e-38 150.00
IUUC-Ocu-074199 Oryctolagus cuniculus 34.78 5.00e-44 170.00
IUUC-Oba-075255 Oryza barthii 61.99 2.00e-101 360.00
IUUC-Obr-076168 Oryza brachyantha 63.35 4.00e-85 306.00
IUUC-Ogl-077777 Oryza glaberrima 69.44 1.00e-117 415.00
IUUC-Ogu-078780 Oryza glumaepatula 69.44 1.00e-117 415.00
IUUC-Oin-079228 Oryza indica 69.44 8.00e-121 426.00
IUUC-Olo-080617 Oryza longistaminata 74.31 1.00e-64 237.00
IUUC-Ome-081421 Oryza meridionalis 68.21 2.00e-117 414.00
IUUC-Oni-082997 Oryza nivara 69.44 8.00e-121 426.00
IUUC-Opu-083931 Oryza punctata 69.66 8.00e-120 422.00
IUUC-Oru-084645 Oryza rufipogon 69.44 1.00e-117 415.00
IUUC-Osa-085842 Oryza sativa 69.44 8.00e-121 426.00
IUUC-Ola-086696 Oryzias latipes 39.10 9.00e-56 209.00
IUUC-Olu-087643 Ostreococcus lucimarinus 47.35 6.00e-55 206.00
IUUC-Oga-088272 Otolemur garnettii 38.14 9.00e-54 202.00
IUUC-Oar-089416 Ovis aries 37.82 2.00e-53 202.00
IUUC-Ptr-090944 Pan troglodytes 37.82 2.00e-53 201.00
IUUC-Pan-091861 Papio anubis 37.82 2.00e-53 201.00
IUUC-Psi-093750 Pelodiscus sinensis 38.46 1.00e-57 216.00
IUUC-Pma-094608 Petromyzon marinus 37.54 3.00e-50 191.00
IUUC-Ppa-095737 Physcomitrella patens 64.81 6.00e-126 442.00
IUUC-Pfo-096479 Poecilia formosa 39.42 4.00e-54 204.00
IUUC-Pab-098179 Pongo abelii 37.82 2.00e-53 201.00
IUUC-Pop-099532 Populus trichocarpa 78.84 9.00e-139 485.00
IUUC-Ppe-102056 Prunus persica 76.01 2.00e-143 500.00
IUUC-Pva-102859 Pteropus vampyrus 37.50 3.00e-52 197.00
IUUC-Rno-105826 Rattus norvegicus 37.50 3.00e-52 197.00
IUUC-Sha-106660 Sarcophilus harrisii 37.70 2.00e-52 198.00
IUUC-Spo-108244 Schizosaccharomyces pombe 25.26 3.00e-24 105.00
IUUC-Smo-109234 Selaginella moellendorffii 59.81 4.00e-107 380.00
IUUC-Sit-110048 Setaria italica 69.04 8.00e-106 375.00
IUUC-Sly-111249 Solanum lycopersicum 69.04 6.00e-127 446.00
IUUC-Stu-112543 Solanum tuberosum 69.35 1.00e-127 448.00
IUUC-Sar-113743 Sorex araneus 37.67 2.00e-37 149.00
IUUC-Sbi-114309 Sorghum bicolor 67.49 4.00e-104 370.00
IUUC-Ssc-115560 Sus scrofa 35.58 5.00e-48 183.00
IUUC-Tgu-117300 Taeniopygia guttata 38.66 2.00e-57 215.00
IUUC-Tru-117933 Takifugu rubripes 39.42 2.00e-58 218.00
IUUC-Tsy-119574 Tarsius syrichta 32.05 3.00e-36 144.00
IUUC-Tni-120191 Tetraodon nigroviridis 39.36 7.00e-42 162.00
IUUC-Tca-120983 Theobroma cacao 81.06 6.00e-145 506.00
IUUC-Tae-124056 Triticum aestivum 68.73 3.00e-116 410.00
IUUC-Tur-126711 Triticum urartu 67.28 2.00e-112 398.00
IUUC-Tme-127066 Tuber melanosporum 26.07 3.00e-23 102.00
IUUC-Tbe-127802 Tupaia belangeri 37.50 5.00e-53 200.00
IUUC-Vpa-130618 Vicugna pacos 38.93 2.00e-45 175.00
IUUC-Vvi-130981 Vitis vinifera 81.62 1.00e-146 511.00
IUUC-Xtr-132460 Xenopus tropicalis 38.14 2.00e-55 208.00
IUUC-Xma-134154 Xiphophorus maculatus 39.42 2.00e-54 204.00
Created Date 25-Jun-2017

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