iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-043341

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000848

Gene Name

LOC100779263; GLYMA_15G069400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA15G07510	GLYMA15G07510.1	GLYMA15G07510.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.70e-38	128.6	140	178
UBD/Beta-Prp	9.80e-67	226.8	99	254

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140  GHSQGISTIKFtPDgRWVVSGGFDNVVKVWDLTAGKLLH 178
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 51   heaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvv 144
           h +  tav+f+p g+++++gs D ++k+wd+++  c+ht+kgh++ + +++f p+g ++vsG+ d++++vwdl  g+ l+  ++ h+g ++++ 
   Q: 99   HRSNCTAVEFHPFGEFFASGSMDTNLKIWDIRKKGCIHTYKGHSQGISTIKFTPDGRWVVSGGFDNVVKVWDLTAGKLLH-DFKFHEGHIRSID 191
           55555666666666666666666666666666666666666666666666666666666666666666666666666666.5666666666666 PP
   S: 145  vhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdl 209
           +hp ++ll++Gs+Drtv++Wdl+t +l+   +      v+s++f+++g+ l +g +dg +k+++ 
   Q: 192  FHPLEFLLATGSADRTVKFWDLETFELIGSARR-EATGVRSIAFHPDGRTLFTGHEDG-LKVYSW 254
           666666666666666666666666666666665.666666666666666666666665.444444 PP

Organism

Glycine max

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKIQE FVAHSASVNC LNIGKKACRL FITGGDDHKV NLWTIGKPTF LTSLSGHTSP 60
VESVAFDSGE VLVLGGASTG VIKLWDLEEA KMVRTVAGHR SNCTAVEFHP FGEFFASGSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATTGAGAAA AATAAATTCC TAGTCATAAT TTTCATTCCC CGTTCTCATT TCTCACTGTT 60
GAATCTGAAT TCTTCTTCTT CTTTTTATTA TTATTTTGAA ACCATTTCTC ATCTGACACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

gmx:100779263

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	40.59	1.00e-160	560.00
IUUC-Mtr-057706	Medicago truncatula	78.40	0.00e+00	1043.00
IUUC-Oba-075016	Oryza barthii	43.32	2.00e-161	564.00
IUUC-Obr-076138	Oryza brachyantha	45.60	0.00e+00	687.00
IUUC-Ogl-077401	Oryza glaberrima	46.54	0.00e+00	692.00
IUUC-Ogu-078062	Oryza glumaepatula	44.46	0.00e+00	644.00
IUUC-Oin-080042	Oryza indica	44.46	0.00e+00	647.00
IUUC-Olo-080713	Oryza longistaminata	43.53	7.00e-172	598.00
IUUC-Ome-081192	Oryza meridionalis	41.89	3.00e-149	521.00
IUUC-Oni-082473	Oryza nivara	44.47	0.00e+00	641.00
IUUC-Oru-085183	Oryza rufipogon	44.46	0.00e+00	647.00
IUUC-Osa-085801	Oryza sativa	46.20	0.00e+00	686.00
IUUC-Sly-111901	Solanum lycopersicum	60.59	0.00e+00	694.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence