iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098809

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000345

Gene Name

POPTRDRAFT_723298; POPTR_0009s03500g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s03500	POPTR_0009s03500.1	POPTR_0009s03500.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.80e-34	117.1	260	332

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+CpIslelM+dPv++++G+ty+rs+Iekwl+ g+ tcP+t q+lt+  l+Pn++lr+li +wce+n++
   Q: 260  IPDDFRCPISLELMNDPVIVSTGQTYERSCIEKWLEVGHDTCPKTLQKLTSAALTPNYVLRSLIAQWCEANGI 332
           89********************************************************************986 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEEENGGLVV QSLIETVNEI ASISDYRCAV KKQYCNLARR LKLLTPMLEE IRDSKDSIIP 60
QQTLKALVSL KQALDSAKDL LKFGSEGSKI YMVLEREQIM NKYHEVTAKL EQALSGISYE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCCTCCCT CCCTCTCTCT CTCTCATGTA GACTGACTGA CGATTATGGG TATTGGTCTA 60
TTAATATTTC AGTAATCCGG TTGAGCAAGG CAAAGGAGTA TCGTCTGGTA GTACGGTGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0009s03500g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001147	Aegilops tauschii	66.73	0.00e+00	702.00
IUUC-Aly-005681	Arabidopsis lyrata	71.54	0.00e+00	915.00
IUUC-Ath-007618	Arabidopsis thaliana	72.31	0.00e+00	917.00
IUUC-Bdi-014772	Brachypodium distachyon	62.73	0.00e+00	772.00
IUUC-Bol-015254	Brassica oleracea	73.19	0.00e+00	900.00
IUUC-Bra-017857	Brassica rapa	72.56	0.00e+00	884.00
IUUC-Gma-043064	Glycine max	75.49	0.00e+00	1002.00
IUUC-Hvu-047052	Hordeum vulgare	65.32	0.00e+00	694.00
IUUC-Lpe-051284	Leersia perrieri	63.06	0.00e+00	749.00
IUUC-Mtr-058332	Medicago truncatula	74.85	0.00e+00	984.00
IUUC-Mac-065438	Musa acuminata	62.39	0.00e+00	768.00
IUUC-Oba-075184	Oryza barthii	62.46	0.00e+00	762.00
IUUC-Obr-076590	Oryza brachyantha	61.57	0.00e+00	744.00
IUUC-Ogl-077386	Oryza glaberrima	62.46	0.00e+00	762.00
IUUC-Ogu-078326	Oryza glumaepatula	62.46	0.00e+00	763.00
IUUC-Oin-079687	Oryza indica	62.46	0.00e+00	762.00
IUUC-Olo-081001	Oryza longistaminata	62.46	0.00e+00	762.00
IUUC-Ome-081417	Oryza meridionalis	62.16	0.00e+00	772.00
IUUC-Oni-082379	Oryza nivara	62.46	0.00e+00	761.00
IUUC-Opu-083774	Oryza punctata	61.69	0.00e+00	764.00
IUUC-Oru-084885	Oryza rufipogon	62.46	0.00e+00	761.00
IUUC-Osa-085946	Oryza sativa	62.14	0.00e+00	754.00
IUUC-Ppa-095383	Physcomitrella patens	51.57	2.00e-176	612.00
IUUC-Ppe-102057	Prunus persica	80.39	0.00e+00	906.00
IUUC-Sit-110392	Setaria italica	65.15	0.00e+00	733.00
IUUC-Sly-111594	Solanum lycopersicum	76.92	0.00e+00	986.00
IUUC-Stu-112876	Solanum tuberosum	76.00	0.00e+00	967.00
IUUC-Sbi-113843	Sorghum bicolor	63.84	0.00e+00	740.00
IUUC-Tca-121745	Theobroma cacao	81.00	0.00e+00	1039.00
IUUC-Tae-124662	Triticum aestivum	63.89	0.00e+00	759.00
IUUC-Tur-126448	Triticum urartu	67.66	0.00e+00	744.00
IUUC-Vvi-131752	Vitis vinifera	82.65	0.00e+00	1004.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence