iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007474

Ensembl Protein ID

AT1G10580.1

UniProt Accession

A4FVN8; A4FVN8_ARATH

Genbank Protein ID

ABO38749.1; AEE28597.1

Protein Name

At1g10580; Transducin/WD40 repeat-like superfamily protein

Genbank Nucleotide ID

BT030336; CP002684

Gene Name

At1g10580; T10O24.21; T10O24_21

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G10580	AT1G10580.1	AT1G10580.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.50e-26	90.7	280	312
UBD/Beta-Prp	4.20e-44	151.8	274	485

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDl 30
           gHt +v++++f   +++ll+s++ D+++k+WD+
   Q: 280  GHTKGVSAIRFfpkQGHLLLSAGMDCKVKIWDV 312
           8*********997544899*************7 PP

UBD/Beta-Prp

   S: 86   cvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdl.etgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtd 181
            vht++gh++ v +++f+p +g+ l+s++ d  +++wd+ ++g+c++ t  gh ++v+ ++++ dg+ + ++++D+ ++ Wd +tg+++ t++ g+ +
   Q: 274  LVHTWSGHTKGVSAIRFFPkQGHLLLSAGMDCKVKIWDVyNSGKCMR-TYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIP 370
           45666666666666666664446666666666666666523455555.66666666666666666666666666666666666666666666555666 PP
   S: 182  svyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdn 278
           +v +l+ d+++ + l++g  d+++  wd+ tge+ +++  h   v+ + f +n+ r+v+ s+D+s+r+W      ++k ++ ++ +++++  +++++n
   Q: 371  YVVKLNPDDDKqNILLAGMSDKKIVQWDINTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNGN 468
           66666644443255566666666666666666666666666666666666666666666666666666666666666666666655555444566666 PP
   S: 279  vlvlgsedskvniwklk 295
            l++ s d+++ i++ +
   Q: 469  WLAAQSLDNQILIYSTR 485
           66666666666666654 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDLIQSYEEE DEAVASSPES SPPRMLKAKS SAPEVDDTAL ALTVANVNQS KSKPIDPTQH 60
VVFYNPTHDQ LWAPMFGPAH PYAKDGIAQG MRNHKLGSVE DASIGSFGFE EQYHTFHKCG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGAAAAGAAA AAAATAGTAA GAGGCTATAT TTGAAAATCT AAATATCGCA CAAATTGCAA 60
CCCTTATTTT AGATTTAGGA ATTTTGAAAC CCTTGTCGAA GAGAAAAGAG GCAAAATCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR032847--PRPF17
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

ath:AT1G10580

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000473	Aegilops tauschii	72.90	0.00e+00	780.00
IUUC-Aml-002243	Ailuropoda melanoleuca	46.33	1.00e-100	359.00
IUUC-Atr-002502	Amborella trichopoda	75.25	0.00e+00	876.00
IUUC-Apl-003885	Anas platyrhynchos	51.96	6.00e-157	546.00
IUUC-Aca-004854	Anolis carolinensis	36.94	7.00e-95	340.00
IUUC-Aly-006158	Arabidopsis lyrata	95.99	0.00e+00	1050.00
IUUC-Ago-007726	Ashbya gossypii	39.48	1.00e-70	259.00
IUUC-Acl-008220	Aspergillus clavatus	39.24	2.00e-117	415.00
IUUC-Afl-008473	Aspergillus flavus	38.81	2.00e-115	408.00
IUUC-Afu-008773	Aspergillus fumigatus	38.11	3.00e-118	418.00
IUUC-Ani-009323	Aspergillus nidulans	40.86	2.00e-103	369.00
IUUC-Ang-009851	Aspergillus niger	50.87	4.00e-110	391.00
IUUC-Aor-009950	Aspergillus oryzae	38.81	2.00e-115	408.00
IUUC-Ate-010372	Aspergillus terreus	39.86	6.00e-119	420.00
IUUC-Ame-011660	Astyanax mexicanus	51.12	2.00e-156	545.00
IUUC-Bta-012568	Bos taurus	50.62	2.00e-157	548.00
IUUC-Bci-013646	Botrytis cinerea	53.31	3.00e-110	391.00
IUUC-Bdi-014199	Brachypodium distachyon	71.51	0.00e+00	780.00
IUUC-Bol-015695	Brassica oleracea	87.26	0.00e+00	1012.00
IUUC-Bra-017923	Brassica rapa	88.11	0.00e+00	1039.00
IUUC-Cel-018535	Caenorhabditis elegans	38.46	6.00e-123	433.00
IUUC-Cja-019071	Callithrix jacchus	50.43	3.00e-157	548.00
IUUC-Cfa-020559	Canis familiaris	50.44	2.00e-157	548.00
IUUC-Cpo-022356	Cavia porcellus	50.43	3.00e-157	547.00
IUUC-Cre-022594	Chlamydomonas reinhardtii	51.63	8.00e-96	342.00
IUUC-Csa-023125	Chlorocebus sabaeus	50.43	2.00e-157	548.00
IUUC-Cho-024676	Choloepus hoffmanni	49.44	1.00e-148	518.00
IUUC-Cin-025229	Ciona intestinalis	48.96	6.00e-147	513.00
IUUC-Csv-025868	Ciona savignyi	68.48	6.00e-38	147.00
IUUC-Cgl-026739	Colletotrichum gloeosporioides	46.51	2.00e-95	342.00
IUUC-Cne-026885	Cryptococcus neoformans	60.00	3.00e-129	454.00
IUUC-Dre-027631	Danio rerio	51.78	1.00e-159	555.00
IUUC-Dno-029815	Dasypus novemcinctus	48.94	7.00e-154	536.00
IUUC-Dor-031143	Dipodomys ordii	62.50	2.00e-133	469.00
IUUC-Dse-031520	Dothistroma septosporum	47.40	7.00e-99	353.00
IUUC-Dme-032050	Drosophila melanogaster	47.11	8.00e-150	523.00
IUUC-Ete-032866	Echinops telfairi	49.73	1.00e-150	526.00
IUUC-Eca-033384	Equus caballus	50.26	1.00e-155	542.00
IUUC-Eeu-034471	Erinaceus europaeus	42.70	1.00e-105	376.00
IUUC-Fca-035727	Felis catus	50.62	1.00e-157	549.00
IUUC-Fal-036774	Ficedula albicollis	52.24	2.00e-160	558.00
IUUC-Fox-037951	Fusarium oxysporum	50.69	1.00e-111	395.00
IUUC-Fso-038287	Fusarium solani	53.82	5.00e-111	394.00
IUUC-Gmo-039670	Gadus morhua	50.35	8.00e-161	559.00
IUUC-Ggr-039764	Gaeumannomyces graminis	48.38	7.00e-106	377.00
IUUC-Gga-040293	Gallus gallus	52.25	3.00e-160	557.00
IUUC-Gac-042159	Gasterosteus aculeatus	50.09	2.00e-159	555.00
IUUC-Gma-044299	Glycine max	77.94	0.00e+00	828.00
IUUC-Ggo-044864	Gorilla gorilla	50.61	1.00e-157	549.00
IUUC-Hsa-046602	Homo sapiens	50.61	1.00e-157	549.00
IUUC-Itr-047985	Ictidomys tridecemlineatus	59.64	3.00e-139	487.00
IUUC-Kpa-049318	Komagataella pastoris	46.41	3.00e-91	328.00
IUUC-Lch-049796	Latimeria chalumnae	44.78	5.00e-130	457.00
IUUC-Lpe-051153	Leersia perrieri	71.33	0.00e+00	796.00
IUUC-Loc-052467	Lepisosteus oculatus	51.77	5.00e-160	556.00
IUUC-Lma-053107	Leptosphaeria maculans	51.16	7.00e-108	383.00
IUUC-Laf-053787	Loxodonta africana	50.26	3.00e-160	557.00
IUUC-Mcc-055706	Macaca mulatta	50.43	2.00e-157	548.00
IUUC-Meu-056757	Macropus eugenii	60.00	1.00e-119	422.00
IUUC-Mor-057079	Magnaporthe oryzae	49.01	2.00e-105	375.00
IUUC-Mpo-057533	Magnaporthe poae	50.43	2.00e-106	379.00
IUUC-Mtr-057950	Medicago truncatula	75.21	0.00e+00	881.00
IUUC-Mla-058910	Melampsora laricipopulina	57.29	1.00e-134	473.00
IUUC-Mga-059366	Meleagris gallopavo	52.25	5.00e-160	556.00
IUUC-Mvi-060349	Microbotryum violaceum	58.02	2.00e-125	442.00
IUUC-Mmr-061209	Microcebus murinus	50.61	1.00e-161	562.00
IUUC-Mdo-062118	Monodelphis domestica	52.06	7.00e-161	559.00
IUUC-Mmu-063173	Mus musculus	52.43	9.00e-157	546.00
IUUC-Mac-065080	Musa acuminata	75.22	0.00e+00	860.00
IUUC-Mpu-066659	Mustela putorius furo	50.62	1.00e-157	549.00
IUUC-Mlu-067029	Myotis lucifugus	52.35	6.00e-157	546.00
IUUC-Nfi-068334	Neosartorya fischeri	40.54	2.00e-119	422.00
IUUC-Ncr-068675	Neurospora crassa	46.07	3.00e-91	328.00
IUUC-Nle-070113	Nomascus leucogenys	50.61	7.00e-159	553.00
IUUC-Opr-070685	Ochotona princeps	47.35	2.00e-146	511.00
IUUC-Ont-071680	Oreochromis niloticus	51.21	8.00e-159	553.00
IUUC-Oan-073573	Ornithorhynchus anatinus	51.19	7.00e-146	509.00
IUUC-Ocu-074074	Oryctolagus cuniculus	50.43	7.00e-161	559.00
IUUC-Oba-075625	Oryza barthii	71.03	0.00e+00	803.00
IUUC-Obr-076510	Oryza brachyantha	71.08	0.00e+00	805.00
IUUC-Ogl-077275	Oryza glaberrima	71.03	0.00e+00	803.00
IUUC-Ogu-078563	Oryza glumaepatula	71.03	0.00e+00	803.00
IUUC-Oin-079898	Oryza indica	81.31	0.00e+00	669.00
IUUC-Olo-081080	Oryza longistaminata	73.05	0.00e+00	736.00
IUUC-Oni-083121	Oryza nivara	71.03	0.00e+00	803.00
IUUC-Opu-083329	Oryza punctata	72.46	0.00e+00	794.00
IUUC-Oru-084807	Oryza rufipogon	69.74	0.00e+00	706.00
IUUC-Osa-086039	Oryza sativa	71.08	0.00e+00	805.00
IUUC-Ola-087149	Oryzias latipes	50.34	3.00e-161	561.00
IUUC-Olu-087627	Ostreococcus lucimarinus	49.71	1.00e-144	506.00
IUUC-Oga-088359	Otolemur garnettii	51.16	9.00e-157	546.00
IUUC-Oar-089390	Ovis aries	50.62	4.00e-157	547.00
IUUC-Ptr-090894	Pan troglodytes	50.61	1.00e-157	549.00
IUUC-Pan-092476	Papio anubis	50.43	2.00e-157	548.00
IUUC-Psi-093527	Pelodiscus sinensis	50.40	1.00e-144	506.00
IUUC-Pno-094771	Phaeosphaeria nodorum	49.58	1.00e-105	375.00
IUUC-Ppa-095386	Physcomitrella patens	73.75	0.00e+00	835.00
IUUC-Pfo-096139	Poecilia formosa	50.00	1.00e-160	559.00
IUUC-Pab-097838	Pongo abelii	49.32	9.00e-134	469.00
IUUC-Pop-099962	Populus trichocarpa	81.00	0.00e+00	906.00
IUUC-Pca-100876	Procavia capensis	42.23	3.00e-121	427.00
IUUC-Ppe-101777	Prunus persica	78.16	0.00e+00	865.00
IUUC-Pva-102418	Pteropus vampyrus	50.62	1.00e-157	548.00
IUUC-Pgr-103456	Puccinia graminis	49.82	3.00e-148	518.00
IUUC-Ptt-103731	Puccinia triticina	47.14	4.00e-134	471.00
IUUC-Pte-104386	Pyrenophora teres	49.04	1.00e-105	376.00
IUUC-Pyt-104560	Pyrenophora triticirepentis	49.17	2.00e-105	375.00
IUUC-Rno-105694	Rattus norvegicus	49.22	6.00e-150	523.00
IUUC-Sce-106339	Saccharomyces cerevisiae	37.39	2.00e-74	271.00
IUUC-Sha-106709	Sarcophilus harrisii	52.06	4.00e-159	553.00
IUUC-Sja-107817	Schizosaccharomyces japonicus	37.24	3.00e-109	388.00
IUUC-Spo-108331	Schizosaccharomyces pombe	45.91	9.00e-104	370.00
IUUC-Ssl-108530	Sclerotinia sclerotiorum	53.75	1.00e-98	353.00
IUUC-Smo-109326	Selaginella moellendorffii	60.38	0.00e+00	652.00
IUUC-Sit-110446	Setaria italica	72.36	0.00e+00	785.00
IUUC-Sly-111330	Solanum lycopersicum	78.99	0.00e+00	867.00
IUUC-Stu-112610	Solanum tuberosum	76.90	0.00e+00	872.00
IUUC-Sar-113065	Sorex araneus	39.29	4.00e-40	158.00
IUUC-Sbi-114005	Sorghum bicolor	72.11	0.00e+00	774.00
IUUC-Sre-114988	Sporisorium reilianum	44.36	6.00e-134	470.00
IUUC-Ssc-115760	Sus scrofa	50.43	2.00e-157	548.00
IUUC-Tgu-116493	Taeniopygia guttata	52.43	2.00e-162	565.00
IUUC-Tru-118489	Takifugu rubripes	48.95	2.00e-156	545.00
IUUC-Tsy-119332	Tarsius syrichta	50.43	2.00e-161	561.00
IUUC-Tni-120202	Tetraodon nigroviridis	47.42	3.00e-148	518.00
IUUC-Tca-121429	Theobroma cacao	79.66	0.00e+00	895.00
IUUC-Tre-122162	Trichoderma reesei	54.07	1.00e-113	402.00
IUUC-Tvi-122500	Trichoderma virens	53.78	2.00e-113	401.00
IUUC-Tae-125557	Triticum aestivum	72.31	0.00e+00	783.00
IUUC-Tur-126554	Triticum urartu	72.21	0.00e+00	778.00
IUUC-Tme-126919	Tuber melanosporum	41.65	4.00e-125	441.00
IUUC-Tbe-127968	Tupaia belangeri	47.65	5.00e-146	510.00
IUUC-Ttr-129215	Tursiops truncatus	50.71	6.00e-155	540.00
IUUC-Uma-129622	Ustilago maydis	45.03	3.00e-136	478.00
IUUC-Vda-129750	Verticillium dahliae	52.03	1.00e-109	389.00
IUUC-Vpa-130617	Vicugna pacos	51.50	1.00e-150	526.00
IUUC-Vvi-131238	Vitis vinifera	79.90	0.00e+00	890.00
IUUC-Xtr-131865	Xenopus tropicalis	48.87	3.00e-156	544.00
IUUC-Xma-133627	Xiphophorus maculatus	50.09	2.00e-160	558.00
IUUC-Yli-134390	Yarrowia lipolytica	52.26	1.00e-107	382.00
IUUC-Zma-135925	Zea mays	71.82	0.00e+00	771.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence