iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099017

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000350

Gene Name

POPTRDRAFT_591840; POPTR_0014s03990g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0014s03990	POPTR_0014s03990.1	POPTR_0014s03990.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	7.70e-06	27.0	29	84
E3 activity/RING/RING	7.30e-08	33.9	32	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwl..asggktcPvtrqplteedlvPn 58
           +f C I ++l +dP v+ +G+ +   ++ kwl   s+ ++cPv+++ ++ee+lvP 
   Q: 29   DFECNICFDLAQDPIVTLCGHLFCWPCLYKWLhfHSKSRECPVCKALVEEEKLVPL 84
           699*****************************87666669**************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iC++  +d p+v+ CgH+f+  Cl+kw    ++ sk+  CP+C+
   Q: 32   CNICFDLAQD-PIVTLCGHLFCWPCLYKW---LHFHSKSRECPVCK 73
           99********.999***************...6679*********7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGSGFGESTS GVPQNPSFTS SNGNGDAGDF ECNICFDLAQ DPIVTLCGHL FCWPCLYKWL 60
HFHSKSRECP VCKALVEEEK LVPLYGRGKT STDPRSKSIP GVNIPNRPAG QRPETAPPPE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCGTAAAAGA AAAGTAGATA AAAAGAAAAA TCAATTGATA CGAATAGCCT TCAGCATTCT 60
CCATCTTGAA TCAATTGATA CGCATCTCTA TCCAAAAAGG TCAGTCTCGG TCTCTGAATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0014s03990g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Mac-065053	Musa acuminata	64.65	1.00e-62	232.00
IUUC-Oba-075461	Oryza barthii	55.56	4.00e-54	204.00
IUUC-Obr-076382	Oryza brachyantha	68.83	6.00e-53	199.00
IUUC-Oga-088197	Otolemur garnettii	53.57	5.00e-24	103.00
IUUC-Pyt-104640	Pyrenophora triticirepentis	33.66	4.00e-10	58.20
IUUC-Sce-106439	Saccharomyces cerevisiae	38.18	4.00e-08	51.60
IUUC-Sly-111255	Solanum lycopersicum	64.42	5.00e-59	219.00
IUUC-Stu-112117	Solanum tuberosum	66.85	4.00e-55	206.00
IUUC-Xtr-131916	Xenopus tropicalis	54.32	6.00e-24	102.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence