iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111543

Ensembl Protein ID

Solyc06g008700.2.1

UniProt Accession

K4C3Q0; K4C3Q0_SOLLC

Protein Name

tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; WD repeat-containing protein 4 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc06g008700.2	Solyc06g008700.2.1	Solyc06g008700.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-15	57.7	200	242

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.....sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH++ v+claf     s  ++l+sG++D t+++WD+++g ll 
   Q: 200  GHSEFVSCLAFicnqdSQqWYLLSGGGDSTVRLWDFTCGSLLD 242
           89999*********87558******************998875 PP

Organism

Solanum lycopersicum

Functional Description
(View)

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.

Protein Sequence
(Fasta)

MEETNMDDCE HNRESEVAPA LIAVHPTQKS VAVAVGSNLR VFNLQEGCSV SLVDNSGVHM 60
HKDSIRAIQY GAEGKLFVSA GDDKLVKIWV TDSWRCISSV SSEKRVTAVA ISNDGRFVSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGGTTTAAC TCTACTCAAC AACAATGGAG GAAACTAACA TGGATGATTG TGAACACAAC 60
CGTGAATCTG AGGTTGCTCC GGCGTTAATT GCAGTTCATC CAACTCAGAA ATCCGTCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0819--tRNA processing
KW-0853--WD repeat

Interpro

IPR028884--Trm82
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0043527--C:tRNA methyltransferase complex
GO:0036265--P:RNA (guanine-N7)-methylation
GO:0030488--P:tRNA methylation

KEGG

sly:101249926

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000556	Aegilops tauschii	49.16	2.00e-94	338.00
IUUC-Atr-002431	Amborella trichopoda	57.60	3.00e-35	139.00
IUUC-Apl-003975	Anas platyrhynchos	27.89	2.00e-23	102.00
IUUC-Aca-005170	Anolis carolinensis	28.52	2.00e-17	82.80
IUUC-Aly-005769	Arabidopsis lyrata	59.03	1.00e-138	485.00
IUUC-Ath-006733	Arabidopsis thaliana	58.10	9.00e-133	466.00
IUUC-Acl-008151	Aspergillus clavatus	41.56	7.00e-11	61.20
IUUC-Afl-008518	Aspergillus flavus	26.46	7.00e-14	70.50
IUUC-Ani-009442	Aspergillus nidulans	27.78	2.00e-12	66.60
IUUC-Aor-010133	Aspergillus oryzae	26.50	9.00e-14	70.90
IUUC-Ame-010613	Astyanax mexicanus	30.53	2.00e-24	105.00
IUUC-Bgr-012067	Blumeria graminis	32.45	1.00e-14	73.60
IUUC-Bta-012788	Bos taurus	29.67	9.00e-25	107.00
IUUC-Bdi-014458	Brachypodium distachyon	54.55	4.00e-108	384.00
IUUC-Bol-016398	Brassica oleracea	55.68	4.00e-123	433.00
IUUC-Bra-016644	Brassica rapa	57.78	1.00e-127	450.00
IUUC-Cpo-021963	Cavia porcellus	32.64	8.00e-22	97.10
IUUC-Csa-024148	Chlorocebus sabaeus	34.07	2.00e-16	79.70
IUUC-Cne-026834	Cryptococcus neoformans	29.17	3.00e-17	82.40
IUUC-Dre-028427	Danio rerio	33.33	2.00e-28	119.00
IUUC-Dor-030522	Dipodomys ordii	26.67	3.00e-22	98.60
IUUC-Dme-032136	Drosophila melanogaster	37.63	1.00e-12	67.00
IUUC-Fca-035833	Felis catus	29.11	2.00e-21	95.90
IUUC-Fal-037497	Ficedula albicollis	26.30	9.00e-25	107.00
IUUC-Gga-040547	Gallus gallus	27.33	2.00e-24	105.00
IUUC-Gac-041761	Gasterosteus aculeatus	29.18	1.00e-22	99.80
IUUC-Gma-043722	Glycine max	60.14	4.00e-140	490.00
IUUC-Ggo-045340	Gorilla gorilla	33.33	3.00e-15	75.50
IUUC-Hsa-046403	Homo sapiens	33.70	1.00e-16	80.10
IUUC-Hvu-047643	Hordeum vulgare	53.96	2.00e-113	401.00
IUUC-Itr-048103	Ictidomys tridecemlineatus	28.63	7.00e-22	97.40
IUUC-Kpa-049283	Komagataella pastoris	34.47	3.00e-18	85.50
IUUC-Lch-050682	Latimeria chalumnae	32.37	7.00e-26	110.00
IUUC-Lpe-050712	Leersia perrieri	52.97	2.00e-119	421.00
IUUC-Loc-052599	Lepisosteus oculatus	35.71	3.00e-30	125.00
IUUC-Laf-054390	Loxodonta africana	34.20	8.00e-24	103.00
IUUC-Mcc-054747	Macaca mulatta	33.88	1.00e-16	80.10
IUUC-Mtr-058600	Medicago truncatula	59.33	3.00e-133	467.00
IUUC-Mla-059135	Melampsora laricipopulina	33.66	2.00e-24	106.00
IUUC-Mga-059876	Meleagris gallopavo	27.33	2.00e-21	95.50
IUUC-Mvi-060359	Microbotryum violaceum	25.82	2.00e-13	70.50
IUUC-Mmr-061518	Microcebus murinus	34.43	3.00e-21	95.10
IUUC-Mac-065417	Musa acuminata	55.61	1.00e-122	432.00
IUUC-Nfi-068402	Neosartorya fischeri	27.18	8.00e-12	64.30
IUUC-Nle-069914	Nomascus leucogenys	31.52	3.00e-13	68.60
IUUC-Ont-071555	Oreochromis niloticus	34.83	3.00e-22	98.60
IUUC-Oan-072951	Ornithorhynchus anatinus	28.74	3.00e-23	102.00
IUUC-Ocu-074679	Oryctolagus cuniculus	30.08	8.00e-18	84.00
IUUC-Oba-075355	Oryza barthii	49.53	2.00e-106	379.00
IUUC-Obr-076769	Oryza brachyantha	53.44	5.00e-127	446.00
IUUC-Ogl-077168	Oryza glaberrima	54.18	2.00e-122	431.00
IUUC-Ogu-078275	Oryza glumaepatula	49.29	3.00e-105	374.00
IUUC-Oin-079207	Oryza indica	54.18	2.00e-122	431.00
IUUC-Ome-081169	Oryza meridionalis	38.90	1.00e-66	246.00
IUUC-Oni-082437	Oryza nivara	49.29	1.00e-105	376.00
IUUC-Opu-084031	Oryza punctata	53.94	5.00e-121	427.00
IUUC-Oru-084380	Oryza rufipogon	49.29	1.00e-105	375.00
IUUC-Osa-085327	Oryza sativa	53.94	1.00e-121	429.00
IUUC-Ola-086716	Oryzias latipes	35.60	2.00e-22	99.40
IUUC-Olu-087708	Ostreococcus lucimarinus	36.19	1.00e-37	149.00
IUUC-Oar-090239	Ovis aries	28.48	7.00e-25	107.00
IUUC-Ptr-090851	Pan troglodytes	33.15	3.00e-15	75.50
IUUC-Pan-092558	Papio anubis	34.07	1.00e-16	79.70
IUUC-Psi-093792	Pelodiscus sinensis	27.93	2.00e-23	102.00
IUUC-Ppa-095757	Physcomitrella patens	41.49	4.00e-79	287.00
IUUC-Pfo-096465	Poecilia formosa	32.17	3.00e-22	99.00
IUUC-Pab-097722	Pongo abelii	33.15	1.00e-16	79.70
IUUC-Pop-098979	Populus trichocarpa	59.77	3.00e-147	513.00
IUUC-Pca-100753	Procavia capensis	43.62	6.00e-15	74.70
IUUC-Ppe-101515	Prunus persica	65.59	1.00e-158	552.00
IUUC-Sja-107780	Schizosaccharomyces japonicus	24.12	1.00e-19	90.10
IUUC-Spo-108251	Schizosaccharomyces pombe	25.86	1.00e-14	73.60
IUUC-Smo-108938	Selaginella moellendorffii	40.55	1.00e-68	253.00
IUUC-Sit-110020	Setaria italica	52.06	1.00e-114	405.00
IUUC-Stu-111925	Solanum tuberosum	97.00	0.00e+00	866.00
IUUC-Sbi-114061	Sorghum bicolor	51.95	3.00e-117	414.00
IUUC-Tgu-117321	Taeniopygia guttata	29.83	4.00e-18	84.70
IUUC-Tru-118454	Takifugu rubripes	38.38	4.00e-24	104.00
IUUC-Tni-119894	Tetraodon nigroviridis	32.11	6.00e-22	97.40
IUUC-Tca-121746	Theobroma cacao	60.94	2.00e-149	521.00
IUUC-Tae-124459	Triticum aestivum	53.96	2.00e-114	405.00
IUUC-Tur-126254	Triticum urartu	49.10	2.00e-89	321.00
IUUC-Tbe-127683	Tupaia belangeri	45.88	7.00e-15	73.90
IUUC-Ttr-129056	Tursiops truncatus	33.16	1.00e-23	103.00
IUUC-Vvi-131428	Vitis vinifera	65.13	8.00e-164	568.00
IUUC-Xma-133605	Xiphophorus maculatus	31.74	1.00e-21	96.70

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence