iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-098786

Ensembl Protein ID

POPTR_0018s14460.1

UniProt Accession

U5FIF0; U5FIF0_POPTR

Genbank Protein ID

ERP50029.1

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000354

Gene Name

POPTR_0018s14460g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0018s14460	POPTR_0018s14460.1	POPTR_0018s14460.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-24	85.5	518	549
UBD/Beta-Prp	2.00e-43	149.8	153	374

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gHtd++t+l+f  d + l+s+s Dgt+++WD+
   Q: 518  GHTDRITDLCFsEDgKWLLSSSMDGTLRIWDV 549
           8**********955699**************6 PP

UBD/Beta-Prp

   S: 66   ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsG 155
             + gs+ + +++w++st k++h +kg  +sv s+ +sp  d++++G +d  i+v +++ ++++ ++   ++g+v+ ++++ dg +ll+sG
   Q: 153  KVLIGSQEGGLQLWNVSTKKMLHEFKGWGSSVSSCVSSPALDVVAVGCADGKIHVHNIRYDEEVVTFSHSTRGAVTALSFSTDGqSLLASG 243
           67889************************************************************8999999******************* PP
   S: 156  slDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq....tgecvrtlnghtdnvksvrfspnderlvsgss 242
           +  +++ +W+l+  kl    +++h++s+ sl f  n + l+s s d+++k+w +       + +r   gh+++++++rf  n+ +++s+++
   Q: 244  GSSGVISIWNLEKRKLQSVVREAHDSSIISLHFLANEPVLMSSSADNSIKMWVFDttdgDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334
           ****************************************************9996666566699999*********************** PP
   S: 243  DgsiriWdlrsgdllktlqlhn.................s 265
           D+  r++ + +++  + l++h+                 +
   Q: 335  DRAFRLFSVIQDQQSRELSQHHvskrakklrvkeeelklK 374
           *******999999999999999665555555555554444 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGIFEPFRAI GYITSGVPFS VQRLGTETFV TVSVGKAFQV YNCAKLTLVL ASPQLPHKIR 60
ALASYRDFTF VAFGTHIAVF KRAHQVARWS GHSGKVNSLM VFGDHVISVD VEGHLFIWGF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGGCATCT TCGAACCGTT TAGAGCAATC GGATACATAA CAAGCGGCGT TCCCTTCTCC 60
GTTCAAAGAC TAGGCACTGA AACCTTCGTT ACAGTTAGCG TAGGCAAAGC TTTTCAAGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR024977--Apc4_WD40_dom
IPR020472--G-protein_beta_WD-40_rep
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0006364--P:rRNA processing

KEGG

pop:POPTR_0018s14460g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Oba-075407	Oryza barthii	60.59	0.00e+00	1031.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence