iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-130909

UUCD1 version

UUC-ViV-00369

Ensembl Protein ID

VIT_18s0001g09600.t01

UniProt Accession

E0CPN5; E0CPN5_VITVI

Genbank Protein ID

CBI19448.3

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN595227

Gene Name

VIT_18s0001g09600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_18s0001g09600	VIT_18s0001g09600.t01	VIT_18s0001g09600.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-46	154.4	380	411
UBD/Beta-Prp	2.10e-70	237.9	254	516

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH ++++++++ ++ tll+s+sdD +ik+W++
   Q: 380  GHRAEINGIRWsPTgTLLASCSDDTSIKIWSM 411
           8***********888***************96 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkg 92
           ++++  + i+ ++++ d++llatgs +g +++w      l++s++++ + + ++++++ g+ l+++++D+++ vwd++t    + ++ 
   Q: 254  VEDNGFAAICELDWKGDGTLLATGSCTGETRIWTPNG-ALVASFEEDMGHIVSLQWNQMGNSLLSCGSDKVV-VWDINTVGSRQEFSF 339
           55666678999**********************9876.999*****************************87.*************** PP
   S: 93   hedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgght 180
           h++++l+ ++   + ++++ s+dr i+v ++  +  ++ t+ gh++ +n+++++p+g ll+s+s+D+ +++W+++ ++ +r+l++ h+
   Q: 340  HSARILDADWRN-NISFATCSADRKIHVCEVGLNRPYK-TFLGHRAEINGIRWSPTGTLLASCSDDTSIKIWSMNHNSFVRDLRS-HK 424
           **********99.7789*********************.*********************************************9.** PP
   S: 181  dsvyslsfdsng.........kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllkt 259
           + vy+++++++g           l+s s d+t+++wd+++g+ ++ l+ h++ ++ ++fspn+e+l+sgs D+ +++W ++ g l+k+
   Q: 425  REVYCIEWSPTGpttdnpnltLLLASSSFDNTINVWDVERGNPIYGLTRHRNIIYTIEFSPNGEYLASGSLDNWLYVWSVKEGRLIKS 512
           ********************889999**********************************************************9998 PP
   S: 260  lqlh 263
           + + 
   Q: 513  YYGG 516
           7665 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MTYVCKVGEN RPVKTFSGHQ DEVNAVKWDP TVSFLASCSD DYTAKVIDNF SLTPFYMKQD 60
DHLHDLKEHT KEIYTIRWSP TGAGTNNPNH QLVLASASFD STIKLWDVEL GCLLYSLNGH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACAACAAT TTGAATTTCA TTGAGGTGCC TCATTGTTCT TTTTCCCCTT ATTATTTTTG 60
TTTTGGCATT TGAATTTAAA TGGAGTTGTG AGTAAAACAG ATATTAATTT TCAGCCCCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Oba-075618	Oryza barthii	52.30	7.00e-97	347.00
IUUC-Ogl-077302	Oryza glaberrima	54.31	3.00e-105	374.00
IUUC-Ogu-078718	Oryza glumaepatula	54.31	3.00e-105	374.00
IUUC-Ome-081696	Oryza meridionalis	53.45	1.00e-100	359.00
IUUC-Oni-082137	Oryza nivara	54.31	3.00e-105	374.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence