iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.6__2128__AT5G20885.1	fgenesh2_kg.6__2128__AT5G20885.1	fgenesh2_kg.6__2128__AT5G20885.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.20e-09	37.5	84	141

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkw.........pglknssskefrCPlCr 46
           Ca+Cl d++dg  ++ l+ C H+fh++C+ +w          +   ++ ++ +CPlCr
   Q: 84   CAVCLGDLEDGdeVRELRnCSHMFHRECIDRWldyeccggdDNNEAEEDNHRTCPLCR 141
           ********65544887778********************99555556999*******8 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSFFIEHSGL IVTQLLYKMA VLITILRWIL AWILRYRSRS RSTSSSSSPS VSPSISSQTI 60
KESLSVTTFR DAAERSPAMI NDTCAVCLGD LEDGDEVREL RNCSHMFHRE CIDRWLDYEC 120

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Nucleotide Sequence
(Fasta)

TCTCTCTCTC TCTCTCTCCC ACACACACAC ACACTTGAGC AAAATCATCA CAACAATGAG 60
CTTCTTCATC GAACATTCTG GTCTCATAGT CACTCAACTT CTCTACAAAA TGGCTGTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

aly:ARALYDRAFT_488994

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002811	Amborella trichopoda	34.74	2.00e-26	110.00
IUUC-Ath-007229	Arabidopsis thaliana	91.57	5.00e-72	262.00
IUUC-Bol-016175	Brassica oleracea	82.95	5.00e-67	246.00
IUUC-Bra-017067	Brassica rapa	82.39	2.00e-66	243.00
IUUC-Oba-075592	Oryza barthii	50.82	8.00e-12	62.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence