iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026766

Ensembl Protein ID

ELA25707

UniProt Accession

L2FH77; L2FH77_COLGN

Genbank Protein ID

ELA25707.1

Protein Name

Ribosome biogenesis protein

Genbank Nucleotide ID

KB021117

Gene Name

CGGC5_13142

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_13142	ELA25707	ELA25707

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.50e-14	51.0	298	332

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gHt+sv  +++  s+   ++s+s Dgti+vWD+r+
   Q: 298  GHTSSVEEIQWspSEqSVFSSASSDGTIRVWDVRS 332
           8***********7667889*************986 PP

Organism

Colletotrichum gloeosporioides

Protein Sequence
(Fasta)

MPPSRVAIAL KAWRLTTRTP AWASSRTNSX XXDEFESESE DGIMEAGVDG RPDAEREAEE 60
KEGAMEVDQG TFIVGRNKLE PGQSLAPDPS TYQMLHNIST PWPCLSFDIL RDSLGDNRKV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCCCCCT CAAGGGTGGC GATCGCCCTG AAGGCATGGA GATTGACGAC AAGGACCCCG 60
GCATGGGCGA GTTCGAGGAC GAATTCNNNN NNNNNNGACG AGTTCGAGAG CGAGAGTGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0042254--P:ribosome biogenesis

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000677	Aegilops tauschii	34.55	3.00e-53	201.00
IUUC-Aml-002309	Ailuropoda melanoleuca	38.91	7.00e-70	256.00
IUUC-Atr-002461	Amborella trichopoda	34.94	9.00e-65	239.00
IUUC-Aca-004760	Anolis carolinensis	37.29	1.00e-64	238.00
IUUC-Aly-005405	Arabidopsis lyrata	34.23	4.00e-61	227.00
IUUC-Ath-007178	Arabidopsis thaliana	35.62	4.00e-62	230.00
IUUC-Ago-007735	Ashbya gossypii	39.59	4.00e-84	303.00
IUUC-Acl-008294	Aspergillus clavatus	62.53	5.00e-156	542.00
IUUC-Afl-008486	Aspergillus flavus	61.02	1.00e-152	531.00
IUUC-Afu-009019	Aspergillus fumigatus	61.78	3.00e-157	546.00
IUUC-Ani-009465	Aspergillus nidulans	63.62	2.00e-152	530.00
IUUC-Ang-009641	Aspergillus niger	60.85	2.00e-152	530.00
IUUC-Ate-010426	Aspergillus terreus	62.53	6.00e-158	548.00
IUUC-Ame-010856	Astyanax mexicanus	39.63	1.00e-67	248.00
IUUC-Bgr-012258	Blumeria graminis	64.86	2.00e-160	556.00
IUUC-Bta-012437	Bos taurus	38.38	3.00e-69	254.00
IUUC-Bci-013647	Botrytis cinerea	67.72	3.00e-165	572.00
IUUC-Bdi-014728	Brachypodium distachyon	36.30	4.00e-64	236.00
IUUC-Bol-015601	Brassica oleracea	35.03	1.00e-62	231.00
IUUC-Bra-017677	Brassica rapa	37.76	6.00e-29	119.00
IUUC-Cel-018454	Caenorhabditis elegans	34.54	4.00e-59	220.00
IUUC-Cja-018859	Callithrix jacchus	39.13	2.00e-68	251.00
IUUC-Cfa-020912	Canis familiaris	39.51	3.00e-70	257.00
IUUC-Cpo-021368	Cavia porcellus	39.36	8.00e-69	252.00
IUUC-Cre-022850	Chlamydomonas reinhardtii	34.08	6.00e-29	120.00
IUUC-Csa-023599	Chlorocebus sabaeus	39.32	1.00e-69	254.00
IUUC-Cin-025718	Ciona intestinalis	40.63	9.00e-72	262.00
IUUC-Csv-025806	Ciona savignyi	40.20	1.00e-49	188.00
IUUC-Cne-026781	Cryptococcus neoformans	41.15	9.00e-71	259.00
IUUC-Cme-027129	Cyanidioschyzon merolae	28.43	3.00e-25	108.00
IUUC-Dre-028225	Danio rerio	38.14	2.00e-65	241.00
IUUC-Dno-029792	Dasypus novemcinctus	37.08	1.00e-61	228.00
IUUC-Dor-030773	Dipodomys ordii	38.01	9.00e-30	122.00
IUUC-Dse-031289	Dothistroma septosporum	61.88	3.00e-145	506.00
IUUC-Dme-031676	Drosophila melanogaster	35.96	2.00e-63	234.00
IUUC-Eca-033618	Equus caballus	38.86	3.00e-67	246.00
IUUC-Fca-036102	Felis catus	37.78	6.00e-66	243.00
IUUC-Fox-037899	Fusarium oxysporum	77.35	0.00e+00	684.00
IUUC-Fso-038130	Fusarium solani	76.12	0.00e+00	672.00
IUUC-Gmo-038741	Gadus morhua	36.53	4.00e-62	229.00
IUUC-Ggr-040086	Gaeumannomyces graminis	68.14	2.00e-170	590.00
IUUC-Gac-042243	Gasterosteus aculeatus	37.85	2.00e-66	244.00
IUUC-Gma-044177	Glycine max	35.86	3.00e-63	234.00
IUUC-Ggo-044564	Gorilla gorilla	39.13	4.00e-68	249.00
IUUC-Hsa-046021	Homo sapiens	38.64	3.00e-68	250.00
IUUC-Hvu-047721	Hordeum vulgare	33.71	2.00e-58	218.00
IUUC-Itr-048189	Ictidomys tridecemlineatus	38.90	2.00e-67	247.00
IUUC-Kpa-049271	Komagataella pastoris	42.34	4.00e-88	316.00
IUUC-Lch-049974	Latimeria chalumnae	35.70	8.00e-67	246.00
IUUC-Lpe-051388	Leersia perrieri	31.72	2.00e-50	191.00
IUUC-Lma-053010	Leptosphaeria maculans	61.21	4.00e-151	526.00
IUUC-Laf-054058	Loxodonta africana	38.72	4.00e-70	256.00
IUUC-Mcc-055246	Macaca mulatta	39.09	1.00e-69	254.00
IUUC-Meu-056795	Macropus eugenii	36.53	2.00e-65	241.00
IUUC-Mor-057175	Magnaporthe oryzae	68.58	5.00e-178	615.00
IUUC-Mpo-057388	Magnaporthe poae	60.35	4.00e-151	525.00
IUUC-Mtr-057752	Medicago truncatula	35.16	3.00e-60	224.00
IUUC-Mla-058904	Melampsora laricipopulina	39.04	3.00e-70	257.00
IUUC-Mvi-060525	Microbotryum violaceum	41.94	1.00e-67	249.00
IUUC-Mmr-060905	Microcebus murinus	39.32	2.00e-69	254.00
IUUC-Mmu-063428	Mus musculus	38.86	8.00e-68	249.00
IUUC-Mac-065276	Musa acuminata	35.45	3.00e-59	220.00
IUUC-Mpu-066062	Mustela putorius furo	38.69	2.00e-68	251.00
IUUC-Mlu-068115	Myotis lucifugus	45.21	7.00e-43	164.00
IUUC-Nfi-068512	Neosartorya fischeri	62.08	3.00e-152	530.00
IUUC-Ncr-068629	Neurospora crassa	70.56	4.00e-179	619.00
IUUC-Nle-070016	Nomascus leucogenys	39.73	3.00e-69	254.00
IUUC-Ont-072230	Oreochromis niloticus	37.38	2.00e-63	234.00
IUUC-Oan-072759	Ornithorhynchus anatinus	25.96	2.00e-35	140.00
IUUC-Ocu-074511	Oryctolagus cuniculus	37.53	2.00e-66	244.00
IUUC-Oba-075093	Oryza barthii	33.56	1.00e-51	195.00
IUUC-Obr-076130	Oryza brachyantha	35.16	5.00e-62	229.00
IUUC-Ogl-077167	Oryza glaberrima	35.62	1.00e-61	229.00
IUUC-Ogu-078111	Oryza glumaepatula	34.75	7.00e-53	201.00
IUUC-Oin-079162	Oryza indica	34.25	9.00e-55	205.00
IUUC-Olo-080909	Oryza longistaminata	34.58	7.00e-43	166.00
IUUC-Ome-081768	Oryza meridionalis	34.52	2.00e-53	201.00
IUUC-Oni-082453	Oryza nivara	34.25	2.00e-54	205.00
IUUC-Opu-084133	Oryza punctata	33.25	2.00e-48	185.00
IUUC-Oru-085056	Oryza rufipogon	35.90	7.00e-49	186.00
IUUC-Osa-085735	Oryza sativa	35.62	1.00e-61	228.00
IUUC-Ola-087066	Oryzias latipes	37.77	2.00e-58	218.00
IUUC-Olu-087594	Ostreococcus lucimarinus	34.04	6.00e-56	209.00
IUUC-Oga-087974	Otolemur garnettii	39.15	6.00e-68	249.00
IUUC-Oar-089902	Ovis aries	38.20	3.00e-68	250.00
IUUC-Ptr-090469	Pan troglodytes	36.24	6.00e-64	236.00
IUUC-Pan-092858	Papio anubis	39.09	1.00e-69	255.00
IUUC-Psi-094092	Pelodiscus sinensis	34.07	4.00e-30	123.00
IUUC-Pno-094919	Phaeosphaeria nodorum	61.52	8.00e-140	488.00
IUUC-Ppa-095849	Physcomitrella patens	31.57	7.00e-61	226.00
IUUC-Pfo-096535	Poecilia formosa	38.06	2.00e-64	238.00
IUUC-Pab-098478	Pongo abelii	38.86	3.00e-69	254.00
IUUC-Pop-100032	Populus trichocarpa	35.05	2.00e-62	231.00
IUUC-Pca-100403	Procavia capensis	40.85	7.00e-51	192.00
IUUC-Ppe-101997	Prunus persica	35.68	4.00e-64	236.00
IUUC-Pva-102423	Pteropus vampyrus	39.13	8.00e-69	252.00
IUUC-Pgr-103339	Puccinia graminis	38.99	3.00e-71	261.00
IUUC-Ptt-103937	Puccinia triticina	38.67	1.00e-70	258.00
IUUC-Pte-104051	Pyrenophora teres	62.81	1.00e-143	500.00
IUUC-Pyt-104644	Pyrenophora triticirepentis	63.47	1.00e-144	504.00
IUUC-Rno-106118	Rattus norvegicus	40.74	2.00e-65	241.00
IUUC-Sce-106330	Saccharomyces cerevisiae	40.05	6.00e-83	299.00
IUUC-Sha-106564	Sarcophilus harrisii	37.66	1.00e-53	202.00
IUUC-Sja-107969	Schizosaccharomyces japonicus	41.97	3.00e-82	297.00
IUUC-Spo-108351	Schizosaccharomyces pombe	43.37	2.00e-87	314.00
IUUC-Ssl-108452	Sclerotinia sclerotiorum	68.85	1.00e-167	580.00
IUUC-Smo-109619	Selaginella moellendorffii	34.95	8.00e-62	229.00
IUUC-Sit-109857	Setaria italica	35.39	3.00e-60	224.00
IUUC-Sly-111245	Solanum lycopersicum	34.09	9.00e-56	209.00
IUUC-Stu-112645	Solanum tuberosum	34.10	4.00e-60	223.00
IUUC-Sar-113342	Sorex araneus	36.74	2.00e-60	224.00
IUUC-Sbi-114359	Sorghum bicolor	35.16	1.00e-61	228.00
IUUC-Sre-115098	Sporisorium reilianum	42.95	6.00e-80	290.00
IUUC-Ssc-115496	Sus scrofa	39.82	2.00e-68	251.00
IUUC-Tru-117662	Takifugu rubripes	38.41	1.00e-65	241.00
IUUC-Tni-120564	Tetraodon nigroviridis	36.34	2.00e-51	194.00
IUUC-Tca-121710	Theobroma cacao	35.23	3.00e-63	233.00
IUUC-Tre-122239	Trichoderma reesei	74.32	0.00e+00	639.00
IUUC-Tvi-122589	Trichoderma virens	75.17	0.00e+00	631.00
IUUC-Tae-125574	Triticum aestivum	35.99	9.00e-63	232.00
IUUC-Tur-126135	Triticum urartu	33.54	6.00e-44	170.00
IUUC-Tme-127073	Tuber melanosporum	44.86	1.00e-94	338.00
IUUC-Ttr-128383	Tursiops truncatus	38.57	5.00e-66	243.00
IUUC-Uma-129345	Ustilago maydis	43.40	2.00e-82	298.00
IUUC-Vda-129893	Verticillium dahliae	78.97	0.00e+00	692.00
IUUC-Vvi-131067	Vitis vinifera	37.47	7.00e-68	249.00
IUUC-Xtr-132603	Xenopus tropicalis	37.56	8.00e-66	242.00
IUUC-Xma-133149	Xiphophorus maculatus	37.62	2.00e-65	241.00
IUUC-Yli-134459	Yarrowia lipolytica	45.31	8.00e-94	335.00
IUUC-Zma-135548	Zea mays	35.39	2.00e-61	228.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence