iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	6.20e-08	33.9	283	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlC 45
           C++Cl+d+  +++ +++ C H+fh++C++ w        ++ +CP+C
   Q: 283  CPTCLDDYtlENPKIITKCSHHFHLSCIYEW------MERSETCPVC 323
           ******998888556799*************......********** PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MPLVLPRKEM AYGSKGRRRQ RRERKDRYYS GNFILHFFDE PEKSSILELV NTGKFLGFLL 60
LLDFLRSLSQ RRNKSFAPRR ERKDSGLREL VKIFCEIGFP LSFSVKFESI DFEDMGAFCC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCTAAGAGA TGTAAATCTG TATGCCCTTG GTGCTGCCGA GAAAAGAAAT GGTTTTTGTA 60
TACAAAAATG TATGGGTCAC AATTAGAATA AGTTTAAGCT TTATAATCGA AACGTTTGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G38895

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005611	Arabidopsis lyrata	92.31	2.00e-112	396.00
IUUC-Bdi-014798	Brachypodium distachyon	42.54	7.00e-41	159.00
IUUC-Bol-016593	Brassica oleracea	82.11	2.00e-95	340.00
IUUC-Bra-018045	Brassica rapa	81.22	2.00e-95	340.00
IUUC-Cme-027114	Cyanidioschyzon merolae	55.38	4.00e-17	81.60
IUUC-Gma-043590	Glycine max	60.18	2.00e-79	287.00
IUUC-Hvu-047810	Hordeum vulgare	42.08	8.00e-44	169.00
IUUC-Mtr-058095	Medicago truncatula	53.30	2.00e-71	261.00
IUUC-Mac-064735	Musa acuminata	43.56	8.00e-50	189.00
IUUC-Oba-075895	Oryza barthii	41.03	8.00e-43	166.00
IUUC-Ppa-095246	Physcomitrella patens	40.25	4.00e-38	150.00
IUUC-Sit-110241	Setaria italica	42.60	2.00e-41	161.00
IUUC-Sly-111103	Solanum lycopersicum	57.96	2.00e-61	228.00
IUUC-Sbi-114816	Sorghum bicolor	40.89	1.00e-38	151.00
IUUC-Tae-123613	Triticum aestivum	42.73	2.00e-41	161.00
IUUC-Vvi-130841	Vitis vinifera	59.73	8.00e-65	239.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence