iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s23980	POPTR_0005s23980.2	POPTR_0005s23980.2
POPTR_0005s23980	POPTR_0005s23980.1	POPTR_0005s23980.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	4.40e-17	63.2	118	216

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 2    vrvkvsykgeirsfaldlekpgkfedLlkavrt.lt.......................elknsevalkYeDedGDlvtlksDedldkavs 68
           ++vkvs++g+++++++dl+ + ++ +L +a+ + +                         l+++++ ++YeD+dGD++ l++D+++d++v+
   Q: 118  TFVKVSMDGAPYLRKVDLKMYKTYHELSDALGKmFSsftigncgshgmkdflnesklidLLNGTDYVPTYEDKDGDWM-LVGDVPWDMFVE 207
           68*******************************6225669999***************99999***************.************ PP
   S: 69   llaskksllrlliqk 83
                 s++rl+i+k
   Q: 208  ------SCKRLRIMK 216
           ......********8 PP

Organism

Populus trichocarpa

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MEVEKGTKMR FEETELRLGL PGNGGGGTEG GEFARKRGFS ETVDLKLNLS SKEGGIDPNH 60
EKTQREKNLL ATDPAKPPAK AQVVGWPPVR SFRKNMLAVQ KSSTDQESTD KVPGGNATFV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATATATATT ATTACAACCT TCTTGCATAA AAAGTTTACC CTTCACTTAA TTTCTCATAC 60
CTTCCAAGAA CCACAAACCC AAGCTCTCAC ACAACTACAT GCCAATTATA AGCATAGAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

pop:POPTR_0005s23980g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gmo-039664	Gadus morhua	38.71	2.20e+00	27.70
IUUC-Oba-075945	Oryza barthii	74.27	6.00e-69	253.00
IUUC-Oin-079136	Oryza indica	74.27	8.00e-69	253.00
IUUC-Oni-082674	Oryza nivara	74.27	6.00e-69	253.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence