iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d008743	Zm00001d008743_T007	Zm00001d008743_T007
Zm00001d008743	Zm00001d008743_T003	Zm00001d008743_T003
Zm00001d008743	Zm00001d008743_T004	Zm00001d008743_T004
Zm00001d008743	Zm00001d008743_T005	Zm00001d008743_T005
Zm00001d008743	Zm00001d008743_T001	Zm00001d008743_T001

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	3.70e-53	182.9	310	792
UBD/Alpha-Helix/UBA	1.00e-14	56.0	669	708

Active Site

Position(s)	Description	Evidence
319	Nucleophile	{ECO:0000256\|PIRSR:PIRSR016308-1}
755	Proton acceptor	{ECO:0000256\|PIRSR:PIRSR016308-1}

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelw........kskkkavsprellkalkkea 81
           tGl NlgN+CYm S++Q++++i+++ + ++e +  ++  +++p +p+ +l ++l+kl + l+        k+ ++ +  r++++++ + +
   Q: 310  TGLANLGNSCYMASIMQVMFSIHPFISRYFEkQSLKAAFATAPADPTVDLNMQLTKLAHGLLsgkysapaKEGQEGIRSRMFKSVITANH 399
           7************************99888834445555678899****************76666666688888*************** PP
   S: 82   eefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvs.sreepfl 170
           +efs+++qqD+ Ef+ +l+d++e++                           +  ++ ++ s  F++ ++++++c++ + ++ +r ++ l
   Q: 400  PEFSSMRQQDVLEFFLHLIDRVEKAN--------------------------PGDRELNPFS-GFKFVVEERVQCPSGKVSYnKRSDNVL 462
           **********************9988..........................5566666665.6************98877767777777 PP
   S: 171  dlslpvpgkeetkke...........................slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilh 233
           +ls+p+++ ++++++                            l+ cL+sf+ +ee+ +   +y++  ++k++++k+ +++++P++L+lh
   Q: 463  SLSIPLHEATNKEQLeafnekkaamnldgkevsnedivrprvPLEACLSSFSGPEEIPD---FYSTALNSKTTVTKTAGFTTFPDYLVLH 549
           8888888777655559*****************************************97...**************************** PP
   S: 234  LkRfsfseeqksrekinkkvefpleLdlspfcts........................................................ 267
           + +f + e++++++k++ ++++p+++d++++ ++                                                        
   Q: 550  MRKF-VMETGWVPKKLDVYIDVPDTIDITHMRSKglqpgeellpeggsgddsaepanpvasedivtqlasmgfnylhcqkaaintsntgv 638
           ****.67889*******************9999999999999999998888888888888888888888888888888777777777777 PP
   S: 268  ....................................peekqke............................................... 274
                                               +     +                                               
   Q: 639  eeamnwllshmddpdindpiskdsrayepsvdeasvQ-----Tlisfgfqediaikalkasggniekatdwifshpeastsasadsstsn 723
           7777777766666666666666666666555555550.....055555555555555555555555666666666666666667777778 PP
   S: 275  ...........kkkYeLiavvvHsG.slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
                      + +Y+L+a v+H+G s+++GHYva+v + +g+W  f+DskV ++   +  +   + +Y++f++r
   Q: 724  vnaddtyipdgSGRYKLMAFVSHMGtSTHCGHYVAHVLK-DGRWTIFNDSKVAVS--VDLPK---EMGYLYFFQR 792
           88899999999****************************.9***********998..57777...8999999997 PP

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLldg 41
            de  ++ l++ GF ++ a++aL a+++n+e A+++++++
   Q: 669  VDEASVQTLISFGFQEDIAIKALKASGGNIEKATDWIFSH 708
           58899*********************************97 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MDLLRSHLHK VRIPEPTNRI HKDECCVSFD TPRSEGGLYV DMVSFLGFGR EYVEWNFEKT 60
GNPVYLHIVQ RRKPEPDEAD RPLKKPTLLA IGVEGGFGDQ EPEYDETFEI VILPDFICLP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTCACTCTC TCTCTACTCT CTTCGTCTGC GCCCCCACAA AACCCTAGAC GCCACCCTCC 60
CCCGCCGCGC GCCGCCGCCC GCGGACATGG ATCTCCTTCG CTCTCATCTC CACAAGGTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR015940--UBA
IPR009060--UBA-like
IPR016652--Ubiquitinyl_hydrolase
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50030--UBA
PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00627--UBA
PF00443--UCH
PF02148--zf-UBP

SMART

SM00165--UBA
SM00290--ZnF_UBP

Gene Ontology

GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0008270--F:zinc ion binding
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

zma:100383086

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000394	Aegilops tauschii	79.29	0.00e+00	1245.00
IUUC-Aml-002104	Ailuropoda melanoleuca	47.31	0.00e+00	752.00
IUUC-Atr-002580	Amborella trichopoda	75.33	2.00e-180	625.00
IUUC-Apl-003774	Anas platyrhynchos	47.75	0.00e+00	733.00
IUUC-Aca-005368	Anolis carolinensis	48.19	0.00e+00	766.00
IUUC-Aly-005727	Arabidopsis lyrata	69.36	0.00e+00	1137.00
IUUC-Ath-006974	Arabidopsis thaliana	69.49	0.00e+00	1137.00
IUUC-Ago-007890	Ashbya gossypii	26.87	5.00e-67	248.00
IUUC-Acl-008057	Aspergillus clavatus	34.34	3.00e-115	409.00
IUUC-Afl-008547	Aspergillus flavus	36.09	7.00e-110	390.00
IUUC-Afu-008805	Aspergillus fumigatus	33.55	7.00e-102	364.00
IUUC-Ani-009441	Aspergillus nidulans	34.94	6.00e-96	344.00
IUUC-Ang-009720	Aspergillus niger	33.86	6.00e-109	387.00
IUUC-Aor-010111	Aspergillus oryzae	34.31	4.00e-119	421.00
IUUC-Ate-010531	Aspergillus terreus	32.31	9.00e-99	353.00
IUUC-Ame-011470	Astyanax mexicanus	41.44	0.00e+00	655.00
IUUC-Bgr-012183	Blumeria graminis	31.60	3.00e-101	362.00
IUUC-Bta-013179	Bos taurus	47.54	0.00e+00	757.00
IUUC-Bci-013858	Botrytis cinerea	33.94	1.00e-112	400.00
IUUC-Bdi-014904	Brachypodium distachyon	87.30	0.00e+00	1402.00
IUUC-Bol-015296	Brassica oleracea	69.65	0.00e+00	1135.00
IUUC-Bra-017939	Brassica rapa	70.27	0.00e+00	1144.00
IUUC-Cel-018625	Caenorhabditis elegans	33.00	3.00e-112	398.00
IUUC-Cja-019063	Callithrix jacchus	46.50	0.00e+00	746.00
IUUC-Cfa-020976	Canis familiaris	48.74	0.00e+00	765.00
IUUC-Cpo-022265	Cavia porcellus	48.74	0.00e+00	767.00
IUUC-Cre-022640	Chlamydomonas reinhardtii	42.05	4.00e-119	421.00
IUUC-Csa-024177	Chlorocebus sabaeus	49.39	0.00e+00	675.00
IUUC-Cho-024702	Choloepus hoffmanni	41.57	7.00e-116	410.00
IUUC-Cin-025411	Ciona intestinalis	43.84	0.00e+00	627.00
IUUC-Csv-026347	Ciona savignyi	41.73	8.00e-176	610.00
IUUC-Cgl-026667	Colletotrichum gloeosporioides	32.35	4.00e-99	355.00
IUUC-Cne-026831	Cryptococcus neoformans	34.59	8.00e-115	407.00
IUUC-Cme-027335	Cyanidioschyzon merolae	29.95	2.00e-35	144.00
IUUC-Dre-027982	Danio rerio	43.87	0.00e+00	650.00
IUUC-Dno-029034	Dasypus novemcinctus	47.60	0.00e+00	757.00
IUUC-Dor-030130	Dipodomys ordii	41.74	4.00e-93	335.00
IUUC-Dse-031467	Dothistroma septosporum	33.98	9.00e-114	404.00
IUUC-Dme-032075	Drosophila melanogaster	45.03	0.00e+00	672.00
IUUC-Ete-032865	Echinops telfairi	44.04	0.00e+00	666.00
IUUC-Eca-034059	Equus caballus	47.55	0.00e+00	756.00
IUUC-Eeu-035304	Erinaceus europaeus	44.73	0.00e+00	669.00
IUUC-Fca-035515	Felis catus	47.66	0.00e+00	761.00
IUUC-Fal-037271	Ficedula albicollis	48.05	0.00e+00	708.00
IUUC-Fox-037745	Fusarium oxysporum	35.04	2.00e-116	412.00
IUUC-Fso-038158	Fusarium solani	33.37	3.00e-107	382.00
IUUC-Gmo-039071	Gadus morhua	44.05	0.00e+00	652.00
IUUC-Ggr-040098	Gaeumannomyces graminis	32.69	9.00e-105	374.00
IUUC-Gga-040635	Gallus gallus	47.31	0.00e+00	766.00
IUUC-Gac-042528	Gasterosteus aculeatus	42.98	0.00e+00	665.00
IUUC-Gma-043614	Glycine max	68.56	0.00e+00	1104.00
IUUC-Ggo-044602	Gorilla gorilla	47.54	0.00e+00	759.00
IUUC-Hsa-045959	Homo sapiens	47.54	0.00e+00	759.00
IUUC-Hvu-047563	Hordeum vulgare	81.80	0.00e+00	1054.00
IUUC-Itr-048712	Ictidomys tridecemlineatus	47.19	0.00e+00	763.00
IUUC-Kpa-049156	Komagataella pastoris	32.73	4.00e-104	372.00
IUUC-Lch-049648	Latimeria chalumnae	47.65	0.00e+00	749.00
IUUC-Lpe-051523	Leersia perrieri	84.62	0.00e+00	1385.00
IUUC-Loc-052072	Lepisosteus oculatus	42.12	0.00e+00	655.00
IUUC-Lma-053216	Leptosphaeria maculans	34.61	1.00e-103	371.00
IUUC-Laf-054327	Loxodonta africana	47.31	0.00e+00	758.00
IUUC-Mcc-055443	Macaca mulatta	47.54	0.00e+00	756.00
IUUC-Meu-056298	Macropus eugenii	50.69	3.00e-154	538.00
IUUC-Mor-057106	Magnaporthe oryzae	34.34	2.00e-110	393.00
IUUC-Mpo-057589	Magnaporthe poae	33.33	1.00e-106	380.00
IUUC-Mtr-058680	Medicago truncatula	68.94	0.00e+00	1131.00
IUUC-Mla-058903	Melampsora laricipopulina	32.37	5.00e-103	368.00
IUUC-Mga-059669	Meleagris gallopavo	47.34	0.00e+00	720.00
IUUC-Mvi-060476	Microbotryum violaceum	33.45	2.00e-98	353.00
IUUC-Mmr-060575	Microcebus murinus	47.78	0.00e+00	758.00
IUUC-Mdo-062183	Monodelphis domestica	47.57	0.00e+00	751.00
IUUC-Mmu-063592	Mus musculus	47.89	0.00e+00	759.00
IUUC-Mac-065634	Musa acuminata	76.68	0.00e+00	679.00
IUUC-Mpu-066082	Mustela putorius furo	48.62	0.00e+00	758.00
IUUC-Mlu-067345	Myotis lucifugus	46.85	0.00e+00	750.00
IUUC-Nfi-068558	Neosartorya fischeri	34.50	1.00e-113	403.00
IUUC-Ncr-068960	Neurospora crassa	31.75	5.00e-101	361.00
IUUC-Nle-070173	Nomascus leucogenys	48.62	0.00e+00	763.00
IUUC-Opr-070556	Ochotona princeps	47.31	0.00e+00	767.00
IUUC-Ont-071502	Oreochromis niloticus	45.40	0.00e+00	671.00
IUUC-Oan-072959	Ornithorhynchus anatinus	50.21	3.00e-67	247.00
IUUC-Ocu-074861	Oryctolagus cuniculus	48.38	0.00e+00	770.00
IUUC-Oba-075109	Oryza barthii	84.89	0.00e+00	1381.00
IUUC-Obr-076292	Oryza brachyantha	86.29	0.00e+00	1363.00
IUUC-Ogl-077065	Oryza glaberrima	87.15	0.00e+00	1435.00
IUUC-Ogu-078776	Oryza glumaepatula	84.89	0.00e+00	1399.00
IUUC-Oin-080048	Oryza indica	86.78	0.00e+00	1427.00
IUUC-Olo-080711	Oryza longistaminata	82.73	0.00e+00	1286.00
IUUC-Ome-081506	Oryza meridionalis	84.59	0.00e+00	1298.00
IUUC-Oni-082320	Oryza nivara	82.62	0.00e+00	1373.00
IUUC-Opu-083801	Oryza punctata	85.64	0.00e+00	1356.00
IUUC-Oru-085139	Oryza rufipogon	82.50	0.00e+00	1369.00
IUUC-Osa-085713	Oryza sativa	87.28	0.00e+00	1437.00
IUUC-Ola-086951	Oryzias latipes	42.69	0.00e+00	648.00
IUUC-Olu-087822	Ostreococcus lucimarinus	40.80	4.00e-168	584.00
IUUC-Oga-088625	Otolemur garnettii	46.89	0.00e+00	754.00
IUUC-Oar-089995	Ovis aries	46.90	0.00e+00	749.00
IUUC-Ptr-090640	Pan troglodytes	46.72	0.00e+00	757.00
IUUC-Pan-091974	Papio anubis	46.73	0.00e+00	750.00
IUUC-Psi-093957	Pelodiscus sinensis	46.96	0.00e+00	768.00
IUUC-Pma-094242	Petromyzon marinus	46.51	2.00e-99	355.00
IUUC-Pno-094835	Phaeosphaeria nodorum	35.66	1.00e-94	340.00
IUUC-Ppa-095901	Physcomitrella patens	61.95	0.00e+00	1033.00
IUUC-Pfo-097148	Poecilia formosa	44.17	0.00e+00	665.00
IUUC-Pab-098068	Pongo abelii	43.04	0.00e+00	633.00
IUUC-Pop-098943	Populus trichocarpa	72.98	0.00e+00	1157.00
IUUC-Pca-100738	Procavia capensis	44.48	1.00e-143	503.00
IUUC-Ppe-101315	Prunus persica	70.41	0.00e+00	1136.00
IUUC-Pva-102154	Pteropus vampyrus	47.31	0.00e+00	753.00
IUUC-Pgr-103343	Puccinia graminis	32.12	3.00e-93	335.00
IUUC-Ptt-103928	Puccinia triticina	29.61	3.00e-88	319.00
IUUC-Pte-104306	Pyrenophora teres	33.01	1.00e-91	330.00
IUUC-Pyt-104696	Pyrenophora triticirepentis	32.85	1.00e-95	343.00
IUUC-Rno-105801	Rattus norvegicus	48.12	0.00e+00	763.00
IUUC-Sce-106304	Saccharomyces cerevisiae	29.97	2.00e-66	246.00
IUUC-Sha-107635	Sarcophilus harrisii	48.80	0.00e+00	755.00
IUUC-Sja-107678	Schizosaccharomyces japonicus	33.54	8.00e-95	341.00
IUUC-Spo-108144	Schizosaccharomyces pombe	33.62	1.00e-107	384.00
IUUC-Smo-108848	Selaginella moellendorffii	60.20	0.00e+00	937.00
IUUC-Sit-110728	Setaria italica	93.08	0.00e+00	1511.00
IUUC-Sly-111523	Solanum lycopersicum	68.66	0.00e+00	1155.00
IUUC-Sar-113733	Sorex araneus	45.48	8.00e-92	331.00
IUUC-Sbi-114419	Sorghum bicolor	95.72	0.00e+00	1535.00
IUUC-Sre-115225	Sporisorium reilianum	32.91	5.00e-105	375.00
IUUC-Ssc-115686	Sus scrofa	46.84	0.00e+00	757.00
IUUC-Tgu-117346	Taeniopygia guttata	47.37	0.00e+00	748.00
IUUC-Tru-118350	Takifugu rubripes	42.76	0.00e+00	655.00
IUUC-Tsy-119278	Tarsius syrichta	39.05	7.00e-160	557.00
IUUC-Tni-120658	Tetraodon nigroviridis	43.45	0.00e+00	647.00
IUUC-Tca-121585	Theobroma cacao	70.99	0.00e+00	1135.00
IUUC-Tre-122043	Trichoderma reesei	34.52	2.00e-109	389.00
IUUC-Tvi-122303	Trichoderma virens	34.55	5.00e-111	395.00
IUUC-Tae-123798	Triticum aestivum	84.53	0.00e+00	1395.00
IUUC-Tur-126732	Triticum urartu	79.37	0.00e+00	1298.00
IUUC-Tme-126909	Tuber melanosporum	34.06	6.00e-103	367.00
IUUC-Tbe-127261	Tupaia belangeri	39.83	3.00e-120	426.00
IUUC-Ttr-128295	Tursiops truncatus	37.81	1.00e-160	560.00
IUUC-Uma-129599	Ustilago maydis	33.87	1.00e-113	404.00
IUUC-Vda-129688	Verticillium dahliae	33.42	1.00e-103	370.00
IUUC-Vpa-130170	Vicugna pacos	36.80	2.00e-143	502.00
IUUC-Vvi-131116	Vitis vinifera	72.01	0.00e+00	1138.00
IUUC-Xtr-131953	Xenopus tropicalis	44.95	0.00e+00	706.00
IUUC-Xma-133837	Xiphophorus maculatus	44.05	0.00e+00	663.00
IUUC-Yli-134510	Yarrowia lipolytica	34.48	3.00e-106	379.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence