iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oba-075016

Ensembl Protein ID

OBART01G33130.1

UniProt Accession

A0A0D3EUS1; A0A0D3EUS1_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OBART01G33130	OBART01G33130.1	OBART01G33130.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-29	101.1	110	148
UBD/Beta-Prp	6.50e-49	167.7	20	223

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + ++ ++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 110  GHRGAIRTIRFtPDgRWVVTGGEDNIVKVWDLTAGKLLH 148
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 44   llrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghd 137
           +++slsgh++ v av+f+  + + + gs+ + ik+wdl+  k v++l+gh +s +s++f+p g++++sGs+d  +++wd++++ c++ t +gh+
   Q: 20   FVQSLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIH-TYKGHR 112
           6899****************99999**************************************************************.****** PP
   S: 138  gvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs 231
           g+++++++ pdg+ +v+G+ D++v++Wdl  gkll++++  h + +++++f+++ + l++gs d+tvk+wdl+t e + +     + v+s  f+
   Q: 113  GAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKF-HSGHIRCIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFH 205
           **************************************99.***************************************************** PP
   S: 232  pnderlvsgssDgsiriWd 250
           p+++ l +g  D+s++++ 
   Q: 206  PDGKTLFCG-LDQSLKVFS 223
           ******999.699999953 PP

Organism

Oryza barthii

Functional Description
(View)

Probably involved in membrane trafficking.

Protein Sequence
(Fasta)

MDTSIGYVEF DSCRVSGLLF VQSLSGHTGS VEAVEFDTAE VLVLAGSSNG SIKLWDLEEA 60
KVVRSLTGHR SSCTSVEFHP FGEFFASGSS DTDLKIWDIK KKGCIHTYKG HRGAIRTIRF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGACACTT CTATTGGTTA TGTTGAATTT GACTCATGCC GTGTTTCTGG CTTATTGTTT 60
GTGCAGAGCT TATCAGGCCA CACTGGCTCA GTTGAGGCTG TTGAGTTTGA TACAGCAGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-1003--Cell membrane
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0206--Cytoskeleton
KW-0472--Membrane
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR007273--SCAMP
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF04144--SCAMP
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0005886--C:plasma membrane
GO:0030658--C:transport vesicle membrane
GO:0051013--P:microtubule severing
GO:0015031--P:protein transport

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	70.29	0.00e+00	1053.00
IUUC-Bdi-014531	Brachypodium distachyon	75.57	0.00e+00	1176.00
IUUC-Cme-027305	Cyanidioschyzon merolae	31.60	1.00e-22	101.00
IUUC-Eeu-034607	Erinaceus europaeus	31.75	4.00e-29	121.00
IUUC-Gma-043341	Glycine max	43.15	9.00e-169	586.00
IUUC-Hvu-047729	Hordeum vulgare	75.25	0.00e+00	849.00
IUUC-Mac-065245	Musa acuminata	53.99	9.00e-160	556.00
IUUC-Nfi-068495	Neosartorya fischeri	38.92	1.00e-30	128.00
IUUC-Obr-076138	Oryza brachyantha	87.08	0.00e+00	1367.00
IUUC-Ogl-077401	Oryza glaberrima	95.53	0.00e+00	1468.00
IUUC-Ogu-078062	Oryza glumaepatula	98.42	0.00e+00	1484.00
IUUC-Oin-080042	Oryza indica	98.16	0.00e+00	1483.00
IUUC-Olo-080713	Oryza longistaminata	88.01	0.00e+00	1912.00
IUUC-Ome-081192	Oryza meridionalis	98.03	0.00e+00	1385.00
IUUC-Oni-082473	Oryza nivara	98.03	0.00e+00	1475.00
IUUC-Opu-083293	Oryza punctata	88.29	0.00e+00	1326.00
IUUC-Oru-085183	Oryza rufipogon	98.03	0.00e+00	1481.00
IUUC-Osa-085801	Oryza sativa	95.15	0.00e+00	1462.00
IUUC-Sit-110364	Setaria italica	75.85	0.00e+00	1098.00
IUUC-Sbi-114389	Sorghum bicolor	67.94	0.00e+00	1028.00
IUUC-Tae-125511	Triticum aestivum	74.30	0.00e+00	1126.00
IUUC-Tur-126181	Triticum urartu	73.45	0.00e+00	1125.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence