iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-100006

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000347

Gene Name

POPTR_0011s04530g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0011s04530	POPTR_0011s04530.1	POPTR_0011s04530.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-34	117.2	140	178
UBD/Beta-Prp	1.50e-55	189.6	104	255

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140  GHTQGISTIRFsPDgRWVVSGGCDNVVKVWDLTAGKLLH 178
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 56   tavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvh 146
           tav+f+p g+++++gs+D++ ++wd+++  c+ht+kgh++ + +++fsp+g ++vsG+ d++++vwdl  g+ l+  ++ h+g ++++ +h
   Q: 104  TAVEFHPFGEFFASGSTDMNMRIWDIRKKGCIHTYKGHTQGISTIRFSPDGRWVVSGGCDNVVKVWDLTAGKLLH-DFKFHEGHIRSIDFH 193
           7899***********************************************************************.8999*********** PP
   S: 147  pdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq 210
           p ++ll++Gs+Drtv++Wdl+t +l+   +      v+s++f+++g + + ++ld ++k+++ +
   Q: 194  PLEFLLATGSADRTVKFWDLETFELIGSARP-EATGVRSITFHPDG-RTLFCGLDDSLKVYSWE 255
           *****************************98.9999********99.5567999999**99876 PP

Organism

Populus trichocarpa

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKLQE FVAHSTNVNC LSIGKKACRM FITGGDDHKV NLWAIGKPTS LMSLCGHTSP 60
VESVAFDTSE VLVLAGASMG AIKLWDLEEA KMVRTLTGHR SNCTAVEFHP FGEFFASGST 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCTGAGAGA GAGAGACCCA CAAATTCCTC TCTATCTGGA ATCCAATTCC TAATCTTTCA 60
AGAATCATCA GTAGCAGCAG ACGGACAACC GCGCGCCTTC CTCAATACGC TACCGTTTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

pop:POPTR_0011s04530g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	42.83	7.00e-128	451.00
IUUC-Aly-005897	Arabidopsis lyrata	64.02	0.00e+00	678.00
IUUC-Ath-006624	Arabidopsis thaliana	65.36	0.00e+00	700.00
IUUC-Bdi-014531	Brachypodium distachyon	50.57	3.00e-158	551.00
IUUC-Bol-016453	Brassica oleracea	47.31	0.00e+00	830.00
IUUC-Bra-017265	Brassica rapa	64.78	0.00e+00	696.00
IUUC-Gma-043323	Glycine max	65.60	0.00e+00	850.00
IUUC-Hvu-047729	Hordeum vulgare	75.65	8.00e-149	520.00
IUUC-Mtr-057706	Medicago truncatula	65.07	0.00e+00	788.00
IUUC-Mac-065245	Musa acuminata	70.86	7.00e-156	544.00
IUUC-Ogu-078062	Oryza glumaepatula	76.97	3.00e-148	518.00
IUUC-Osa-085801	Oryza sativa	77.27	2.00e-151	528.00
IUUC-Ppe-101697	Prunus persica	61.52	0.00e+00	791.00
IUUC-Sly-111901	Solanum lycopersicum	60.26	0.00e+00	725.00
IUUC-Sbi-114389	Sorghum bicolor	74.35	2.00e-146	513.00
IUUC-Tca-121590	Theobroma cacao	60.02	0.00e+00	1117.00
IUUC-Tae-125438	Triticum aestivum	48.66	4.00e-156	545.00
IUUC-Tur-126181	Triticum urartu	45.91	2.00e-150	526.00
IUUC-Vvi-130939	Vitis vinifera	72.17	0.00e+00	802.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence