iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.80e-09	37.2	107	149

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg...plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           CaiCl++f++g    ++  C+H fh +C++kw       s++ +CP+Cr
   Q: 107  CAICLSEFEQGesiQVLEKCQHGFHVKCIHKW------LSTRSSCPTCR 149
           ********77666544488*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MRLLVAEAAS PLSSAATPTC NSHTCRWKPY SNSTDFTANA SVLLILVISA LICALSLYAA 60
IRCFLRPTLE TEDDHKPDPE AAASSTPTTP TLVYSSDLEL AGAEAECAIC LSEFEQGESI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGCAATCCC TCATCCATCG CAATAATATC CATTAATGTG AAGTGGACCA AAAGAGAGAG 60
AAGCGAGTGT TACAGTCCTC AAAATAGAGA CGAAACCATC CTAATCCTTC AAACTCTCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0732--Signal
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G47610

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005493	Arabidopsis lyrata	95.18	2.00e-72	264.00
IUUC-Bol-016197	Brassica oleracea	75.78	2.00e-57	214.00
IUUC-Bra-018017	Brassica rapa	87.88	2.00e-47	181.00
IUUC-Ogu-078237	Oryza glumaepatula	42.96	2.00e-13	67.80
IUUC-Oin-079416	Oryza indica	42.96	2.00e-13	67.80
IUUC-Ome-081260	Oryza meridionalis	42.96	2.00e-13	67.80
IUUC-Opu-084022	Oryza punctata	44.20	1.00e-15	75.50
IUUC-Osa-086043	Oryza sativa	42.96	2.00e-13	67.80
IUUC-Pop-098935	Populus trichocarpa	50.62	6.00e-33	132.00
IUUC-Ppe-101902	Prunus persica	50.65	1.00e-30	125.00
IUUC-Tca-121529	Theobroma cacao	57.93	1.00e-43	168.00
IUUC-Tae-122871	Triticum aestivum	43.80	1.00e-18	85.10

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence